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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463212 (33 seq.)
>W1710809937
LKGQ01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-16-1b [LKGQ]
5203
5278
+
His
GTG
[ENA]
¡û
>W1711018936
LQXI01000011
Gammaproteobacteria
Pseudoalteromonas haloplanktis [LQXI]
279642
279717
+
His
GTG
[ENA]
¡û
>W1711138183
LVCN01000044
Gammaproteobacteria
Pseudoalteromonas spiralis [LVCN]
64162
64087
-
His
GTG
[ENA]
¡û
>W1711254922
LYRQ01000074
Gammaproteobacteria
Pseudoalteromonas sp. MQS005 [LYRQ]
10611
10686
+
His
GTG
[ENA]
¡û
>W1711330078
MBMS01000039
Gammaproteobacteria
Pseudoalteromonas tetraodonis [MBMS]
15087
15012
-
His
GTG
[ENA]
¡û
>W1711724241
MTQB01000035
Gammaproteobacteria
Pseudoalteromonas sp. SK18 [MTQB]
14237
14162
-
His
GTG
[ENA]
¡û
>W141086479
AUTH01000096
Gammaproteobacteria
Pseudoalteromonas sp. TB41 TB41 [AUTH]
3535
3460
-
His
GTG
[ENA]
¡û
>W141276148
JADO01000011
Gammaproteobacteria
Pseudoalteromonas sp. 23_GOM-1509m [JADO]
199182
199107
-
His
GTG
[ENA]
¡û
>WENV170134476
CENU01110969
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1800
1725
-
His
GTG
[ENA]
¢þ
>WENV170266327
CERE01057907
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10220
10145
-
His
GTG
[ENA]
¢þ
>W141426170
JEMJ01000005
Gammaproteobacteria
Pseudoalteromonas sp. SCSIO_11900 [JEMJ]
249784
249709
-
His
GTG
[ENA]
¡û
>WENV170868940
MDTB01169451
[MDTB] marine metagenome; seawater
2133
2058
-
His
GTG
[ENA]
¢þ
>C181010409
CP011030
Gammaproteobacteria
Pseudoalteromonas issachenkonii KMM 3549 [CP011030, CP011031]
511637
511562
-
His
GTG
-
¡û
>C181010827
CP011041
Gammaproteobacteria
Pseudoalteromonas tetraodonis GFC [CP011041, CP011042]
467872
467797
-
His
GTG
-
¡û
>C191016482
CP019770
Gammaproteobacteria
Pseudoalteromonas sp. DL-6 [CP019770, CP019771]
511517
511442
-
His
GTG
-
¡û
>W141564110
JIAM01000011
Gammaproteobacteria
Pseudoalteromonas sp. 6BO_GOM-1096m [JIAM]
198949
198874
-
His
GTG
[ENA]
¡û
>W141779565
JONX01000036
Gammaproteobacteria
Colwellia sp. 8_GOM-1096m [JONX]
20757
20832
+
His
GTG
[ENA]
¡û
>W141806385
JPMC01000016
Gammaproteobacteria
Pseudoalteromonas sp. A2 [JPMC]
345819
345744
-
His
GTG
[ENA]
¡û
>W1810606354
QGQU01000003
Gammaproteobacteria
Pseudoalteromonas sp. meg-B1 [QGQU]
296983
297058
+
His
GTG
[ENA]
¡û
>C11118010
CP001796
Gammaproteobacteria
Pseudoalteromonas sp. SM9913 [CP001796, CP001797]
465847
465772
-
His
GTG
[Ensembl]
¡û
>W1511324766
JQFL01000060
Gammaproteobacteria
Pseudoalteromonas sp. ND6B [JQFL]
20351
20276
-
His
GTG
[ENA]
¡û
>C161055849
CP013350
Gammaproteobacteria
Pseudoalteromonas issachenkonii KCTC 12958 [CP013350, CP013351]
511755
511680
-
His
GTG
[Ensembl]
¡û
>W121025491
AHCF01000004
Gammaproteobacteria
Pseudoalteromonas undina NCIMB 2128 [AHCF]
198311
198236
-
His
GTG
[ENA]
¡û
>W121067605
AJTK01000026
Gammaproteobacteria
Pseudoalteromonas sp. PAMC 22718 [AJTK]
25587
25512
-
His
GTG
[ENA]
¡û
>W121123118
BADU01000134
Gammaproteobacteria
Pseudoalteromonas sp. BSi20311 [BADU]
10771
10696
-
His
GTG
[ENA]
¡û
>W121123246
BADW01000168
Gammaproteobacteria
Pseudoalteromonas sp. BSi20439 [BADW]
20731
20806
+
His
GTG
[ENA]
¡û
>W121123309
BADX01000145
Gammaproteobacteria
Pseudoalteromonas sp. BSi20480 [BADX]
4952
5027
+
His
GTG
[ENA]
¡û
>W1610635506
LITK01000005
Gammaproteobacteria
Pseudoalteromonas undina tetraodonis [LITK]
289314
289389
+
His
GTG
[ENA]
¡û
>W1610673992
LKGQ01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-16-1b [LKGQ]
5203
5278
+
His
GTG
[ENA]
¡û
>W1610949269
LVCN01000044
Gammaproteobacteria
Pseudoalteromonas spiralis [LVCN]
64162
64087
-
His
GTG
[ENA]
¡û
>W1611018503
LYRQ01000074
Gammaproteobacteria
Pseudoalteromonas sp. MQS005 [LYRQ]
10611
10686
+
His
GTG
[ENA]
¡û
>W1710577257
FPAR01000006
Gammaproteobacteria
Pseudoalteromonas sp. DSM 26666 [FPAR]
313187
313262
+
His
GTG
[ENA]
¡û
>W1710770134
LITK01000005
Gammaproteobacteria
Pseudoalteromonas undina tetraodonis [LITK]
289314
289389
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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