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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463274 (133 seq.)
>W1710793531
LJPL01000010
Bacillota
Streptococcus pasteurianus [LJPL]
36452
36380
-
Thr
CGT
[ENA]
¡û
>W1710989092
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1117766
1117838
+
Thr
CGT
[ENA]
¡û
>W1710989186
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
553146
553074
-
Thr
CGT
[ENA]
¡û
>W1711006301
LQOF01000365
Bacillota
Streptococcus gallolyticus [LQOF]
1170
1242
+
Thr
CGT
[ENA]
¡û
>W1711006413
LQOI01000134
Bacillota
Streptococcus lutetiensis [LQOI]
2697
2625
-
Thr
CGT
[ENA]
¡û
>W1711019338
LQXV01000399
Bacillota
Streptococcus gallolyticus [LQXV]
2726
2654
-
Thr
CGT
[ENA]
¡û
>W1711080501
LSRA01000032
Bacillota
Streptococcus pasteurianus [LSRA]
19321
19393
+
Thr
CGT
[ENA]
¡û
>W1711207030
LXFC01000001
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
19922
19994
+
Thr
CGT
[ENA]
¡û
>W1711305560
MAMV01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [MAMV]
19922
19994
+
Thr
CGT
[ENA]
¡û
>C171084854
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
361749
361821
+
Thr
CGT
-
¡û
>WENV180116417
OAQU01000644
[OAQU] human gut metagenome; ENVO:feces
1819
1891
+
Thr
CGT
[ENA]
¢þ
>WENV180116475
OAQV01000030
[OAQV] human gut metagenome; ENVO:feces
36313
36241
-
Thr
CGT
[ENA]
¢þ
>WENV180116687
OAQX01000100
[OAQX] human gut metagenome; ENVO:feces
2931
2859
-
Thr
CGT
[ENA]
¢þ
>WENV180117319
OARK01000088
[OARK] human gut metagenome; ENVO:feces
2762
2690
-
Thr
CGT
[ENA]
¢þ
>WENV180119126
OASD01011874
[OASD] human gut metagenome; ENVO:feces
205
277
+
Thr
CGT
[ENA]
¢þ
>WENV180198552
OBAD01000613
[OBAD] human gut metagenome; ENVO:feces
5905
5833
-
Thr
CGT
[ENA]
¢þ
>WENV180239251
OBDB01000287
[OBDB] human gut metagenome; human gut
12980
13052
+
Thr
CGT
[ENA]
¢þ
>WENV180400550
OBRI01001996
[OBRI] human gut metagenome; ENVO:feces
453
525
+
Thr
CGT
[ENA]
¢þ
>WENV180401615
OBRM01000943
[OBRM] human gut metagenome; ENVO:feces
1006
934
-
Thr
CGT
[ENA]
¢þ
>WENV180401819
OBRN01002641
[OBRN] human gut metagenome; ENVO:feces
1136
1208
+
Thr
CGT
[ENA]
¢þ
>WENV180405177
OBSE01018382
[OBSE] human gut metagenome; ENVO:feces
269
197
-
Thr
CGT
[ENA]
¢þ
>WENV180408323
OBUS01000522
[OBUS] human gut metagenome; faeces
19286
19358
+
Thr
CGT
[ENA]
¢þ
>WENV180411309
OBUY01009096
[OBUY] human gut metagenome; faeces
338
410
+
Thr
CGT
[ENA]
¢þ
>WENV180415663
OBVF01000071
[OBVF] human gut metagenome; faeces
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV180418816
OBVL01000128
[OBVL] human gut metagenome; faeces
2729
2657
-
Thr
CGT
[ENA]
¢þ
>WENV180482459
OBZG01000637
[OBZG] human gut metagenome; faeces
2726
2654
-
Thr
CGT
[ENA]
¢þ
>WENV180597231
OCPK01011996
[OCPK] human gut metagenome; ENVO:feces
327
255
-
Thr
CGT
[ENA]
¢þ
>WENV181338310
OFMF01001487
[OFMF] human gut metagenome; human gut
13034
13106
+
Thr
CGT
[ENA]
¢þ
>WENV181366145
OFPS01001057
[OFPS] human gut metagenome; human gut
19283
19355
+
Thr
CGT
[ENA]
¢þ
>WENV181516316
OGGX01003482
[OGGX] metagenome; Human gut stool
2574
2502
-
Thr
CGT
[ENA]
¢þ
>WENV181527113
OGHK01000316
[OGHK] metagenome; Human gut stool
30879
30807
-
Thr
CGT
[ENA]
¢þ
>WENV181555203
OGIT01000123
[OGIT] metagenome; Human gut stool
36658
36586
-
Thr
CGT
[ENA]
¢þ
>WENV181557938
OGIW01000634
[OGIW] metagenome; Human gut stool
5122
5050
-
Thr
CGT
[ENA]
¢þ
>WENV181559701
OGIZ01024504
[OGIZ] metagenome; Human gut stool
180
252
+
Thr
CGT
[ENA]
¢þ
>WENV181561528
OGJD01008371
[OGJD] metagenome; Human gut stool
180
252
+
Thr
CGT
[ENA]
¢þ
>WENV181564153
OGJH01001941
[OGJH] metagenome; Human gut stool
2774
2702
-
Thr
CGT
[ENA]
¢þ
>WENV181568192
OGJK01000819
[OGJK] metagenome; Human gut stool
30753
30681
-
Thr
CGT
[ENA]
¢þ
>WENV181577575
OGJX01002991
[OGJX] metagenome; Human gut stool
2032
1960
-
Thr
CGT
[ENA]
¢þ
>WENV181579737
OGJZ01000858
[OGJZ] metagenome; Human gut stool
22801
22729
-
Thr
CGT
[ENA]
¢þ
>W08006800
ABJK02000007
Bacillota
Streptococcus infantarius subsp. infantarius ATCC BAA-102 [ABJK]
14674
14602
-
Thr
CGT
[ENA]
¡û
>WENV181794884
OGRS01005157
[OGRS] human gut metagenome; faeces
2771
2699
-
Thr
CGT
[ENA]
¢þ
>WENV181879356
OGXF01000194
[OGXF] human gut metagenome; faeces
36421
36349
-
Thr
CGT
[ENA]
¢þ
>WENV181887526
OGXL01006977
[OGXL] human gut metagenome; faeces
4121
4049
-
Thr
CGT
[ENA]
¢þ
>WENV181889639
OGXN01000637
[OGXN] human gut metagenome; faeces
6016
6088
+
Thr
CGT
[ENA]
¢þ
>WENV181965092
OGZS01000429
[OGZS] human gut metagenome; faeces
19340
19412
+
Thr
CGT
[ENA]
¢þ
>WENV181998013
OHAU01013025
[OHAU] human gut metagenome; faeces
2081
2153
+
Thr
CGT
[ENA]
¢þ
>WENV182140649
OHKR01000242
[OHKR] human gut metagenome; feces
5122
5050
-
Thr
CGT
[ENA]
¢þ
>WENV182149111
OHLG01000026
[OHLG] human gut metagenome; feces
19302
19374
+
Thr
CGT
[ENA]
¢þ
>WENV182164509
OHMN01000503
[OHMN] human gut metagenome; faeces
181
253
+
Thr
CGT
[ENA]
¢þ
>WENV182185635
OHOG01000230
[OHOG] human gut metagenome; feces
1185
1257
+
Thr
CGT
[ENA]
¢þ
>WENV182230088
OHRK01000236
[OHRK] human gut metagenome; feces
5114
5042
-
Thr
CGT
[ENA]
¢þ
>WENV182394707
OIEJ01000418
[OIEJ] human gut metagenome; human gut
14476
14404
-
Thr
CGT
[ENA]
¢þ
>WENV182406168
OIEX01000994
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
2370
2442
+
Thr
CGT
[ENA]
¢þ
>WENV182409798
OIFJ01000346
[OIFJ] human gut metagenome; stool
253
181
-
Thr
CGT
[ENA]
¢þ
>WENV182413288
OIFX01000287
[OIFX] human gut metagenome; stool
19364
19436
+
Thr
CGT
[ENA]
¢þ
>WENV182441951
OIKE01008305
[OIKE] human gut metagenome; human gut
933
1005
+
Thr
CGT
[ENA]
¢þ
>WENV182454210
OIML01016305
[OIML] human gut metagenome; human gut
558
630
+
Thr
CGT
[ENA]
¢þ
>WENV182458537
OINI01010553
[OINI] human gut metagenome; human gut
586
514
-
Thr
CGT
[ENA]
¢þ
>WENV182466123
OIOO01016735
[OIOO] human gut metagenome; human gut
525
453
-
Thr
CGT
[ENA]
¢þ
>W141261883
CCBC010000125
Bacillota
Streptococcus gallolyticus [CCBC]
663
591
-
Thr
CGT
[ENA]
¡û
>WENV182811302
OJXK01000087
[OJXK] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV182814506
OJYK01000217
[OJYK] human gut metagenome; human gut
19980
20052
+
Thr
CGT
[ENA]
¢þ
>WENV182820282
OKAL01000237
[OKAL] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV182842402
OKIE01000077
[OKIE] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV182848273
OKKG01000254
[OKKG] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV182854704
OKMW01000228
[OKMW] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV182856260
OKNJ01000037
[OKNJ] human gut metagenome; human gut
19980
20052
+
Thr
CGT
[ENA]
¢þ
>WENV182862047
OKPJ01000211
[OKPJ] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV182951040
OKVT01000939
[OKVT] human gut metagenome; human gut
3125
3053
-
Thr
CGT
[ENA]
¢þ
>WENV182959032
OKWI01000191
[OKWI] human gut metagenome; stool
19307
19379
+
Thr
CGT
[ENA]
¢þ
>WENV182961810
OKWL01000392
[OKWL] human gut metagenome; stool
19307
19379
+
Thr
CGT
[ENA]
¢þ
>WENV182962387
OKWN01000433
[OKWN] human gut metagenome; stool
19307
19379
+
Thr
CGT
[ENA]
¢þ
>WENV182965784
OKWT01000201
[OKWT] human gut metagenome; stool
19915
19987
+
Thr
CGT
[ENA]
¢þ
>WENV182990204
OLAL01021020
[OLAL] human gut metagenome; human gut
296
368
+
Thr
CGT
[ENA]
¢þ
>WENV182991841
OLAR01010356
[OLAR] human gut metagenome; human gut
148
76
-
Thr
CGT
[ENA]
¢þ
>WENV183160096
OLOU01051553
[OLOU] human gut metagenome; faeces
639
711
+
Thr
CGT
[ENA]
¢þ
>WENV183237740
OLQY01001291
[OLQY] human gut metagenome; faeces
19298
19370
+
Thr
CGT
[ENA]
¢þ
>WENV183333955
OLWE01025870
[OLWE] human gut metagenome; feces
100
28
-
Thr
CGT
[ENA]
¢þ
>WENV183603137
OODK01000748
[OODK] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV183605952
OODN01000152
[OODN] human gut metagenome; human gut
36419
36347
-
Thr
CGT
[ENA]
¢þ
>WENV183609134
OODQ01001706
[OODQ] human gut metagenome; human gut
1348
1420
+
Thr
CGT
[ENA]
¢þ
>WENV183780920
PPYF01188255
[PPYF] human gut metagenome; stool from patient with Crohn's disease
19366
19438
+
Thr
CGT
[ENA]
¢þ
>WENV183785887
PPYF01298483
[PPYF] human gut metagenome; stool from patient with Crohn's disease
19307
19379
+
Thr
CGT
[ENA]
¢þ
>C181207753
LS483348
Bacillota
Streptococcus lutetiensis NCTC8738 [LS483348]
267358
267430
+
Thr
CGT
-
¡û
>C181211216
LS483403
Bacillota
Streptococcus lutetiensis NCTC13774 [LS483403]
263114
263186
+
Thr
CGT
-
¡û
>C181211601
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
361839
361911
+
Thr
CGT
-
¡û
>C181214982
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
306681
306753
+
Thr
CGT
-
¡û
>C191166398
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
285933
286005
+
Thr
CGT
-
¡û
>C191199834
LR134203
Bacillota
Streptococcus lutetiensis NCTC11436 [LR134203]
1801620
1801548
-
Thr
CGT
-
¡û
>C191223100
LR594044
Bacillota
Streptococcus lutetiensis NCTC8796 [LR594044]
1514288
1514216
-
Thr
CGT
-
¡û
>W141727309
JNCV01000015
Bacillota
Streptococcus macedonicus [JNCV]
52645
52717
+
Thr
CGT
[ENA]
¡û
>C141001290
CP003025
Bacillota
Streptococcus lutetiensis 033 [CP003025]
236982
237054
+
Thr
CGT
[Ensembl]
¡û
>W1910889498
NETH01000012
Bacillota
Streptococcus gallolyticus BI02 [NETH]
33609
33537
-
Thr
CGT
[ENA]
¡û
>W1810069583
PEBL01000020
Bacillota
Streptococcus macedonicus 211MA [PEBL]
17598
17670
+
Thr
CGT
[ENA]
¡û
>W1810069615
PEBM01000049
Bacillota
Streptococcus macedonicus 27MV [PEBM]
31481
31409
-
Thr
CGT
[ENA]
¡û
>W1810069642
PEBN01000014
Bacillota
Streptococcus macedonicus 19AS [PEBN]
30861
30789
-
Thr
CGT
[ENA]
¡û
>W1810188080
PKIB01000011
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
19409
19481
+
Thr
CGT
[ENA]
¡û
>W1810823948
QSHE01000026
Bacillota
Streptococcus lutetiensis AM38-16 [QSHE]
2784
2712
-
Thr
CGT
[ENA]
¡û
>W1810829843
QSLI01000023
Bacillota
Streptococcus lutetiensis AM25-7 [QSLI]
19289
19361
+
Thr
CGT
[ENA]
¡û
>W1810904645
QVEM01000012
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
36361
36289
-
Thr
CGT
[ENA]
¡û
>W1810905290
QVEY01000026
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
5128
5056
-
Thr
CGT
[ENA]
¡û
>W1810907448
QVHT01000008
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
19340
19412
+
Thr
CGT
[ENA]
¡û
>W1810907650
QVHX01000014
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
19345
19417
+
Thr
CGT
[ENA]
¡û
>W1510069666
CDEY01000011
Bacillota
Streptococcus pasteurianus HC-2909-2 [CDEY]
36356
36284
-
Thr
CGT
[ENA]
¡û
>W10127556
AEEL01000005
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
19293
19365
+
Thr
CGT
[ENA]
¡û
>W10127584
AEEM01000005
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
1539
1611
+
Thr
CGT
[ENA]
¡û
>C10111578
FN597254
Bacillota
Streptococcus gallolyticus UCN34 [FN597254]
281284
281356
+
Thr
CGT
[Ensembl]
¡û
>C11120581
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
334400
334472
+
Thr
CGT
[Ensembl]
¡û
>C11121172
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
262109
262181
+
Thr
CGT
[Ensembl]
¡û
>W1511447394
JUYN01000039
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
5130
5058
-
Thr
CGT
[ENA]
¡û
>W11135044
AEEL01000005
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
19293
19365
+
Thr
CGT
[ENA]
¡û
>W11135072
AEEM01000005
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
1539
1611
+
Thr
CGT
[ENA]
¡û
>W1511530606
JYKU01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
20640
20712
+
Thr
CGT
[ENA]
¡û
>C121010332
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
289551
289623
+
Thr
CGT
[Ensembl]
¡û
>C121017471
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
307291
307363
+
Thr
CGT
[Ensembl]
¡û
>C121017997
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
338402
338474
+
Thr
CGT
[Ensembl]
¡û
>C161059315
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1656735
1656663
-
Thr
CGT
[Ensembl]
¡û
>C161059379
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
250676
250748
+
Thr
CGT
[Ensembl]
¡û
>W1610514143
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
224896
224968
+
Thr
CGT
[ENA]
¡û
>W1610843968
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1117766
1117838
+
Thr
CGT
[ENA]
¡û
>W1610844062
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
553146
553074
-
Thr
CGT
[ENA]
¡û
>W1610856951
LQOF01000365
Bacillota
Streptococcus gallolyticus [LQOF]
1170
1242
+
Thr
CGT
[ENA]
¡û
>W1610857063
LQOI01000134
Bacillota
Streptococcus lutetiensis [LQOI]
2697
2625
-
Thr
CGT
[ENA]
¡û
>W1610867626
LQXV01000399
Bacillota
Streptococcus gallolyticus [LQXV]
2726
2654
-
Thr
CGT
[ENA]
¡û
>W1610919368
LSRA01000032
Bacillota
Streptococcus pasteurianus [LSRA]
19321
19393
+
Thr
CGT
[ENA]
¡û
>W1610995060
LXFC01000001
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
19922
19994
+
Thr
CGT
[ENA]
¡û
>W1710520162
FNFJ01000008
Bacillota
Streptococcus gallolyticus [FNFJ]
20214
20286
+
Thr
CGT
[ENA]
¡û
>W1710521634
FNGN01000008
Bacillota
Streptococcus gallolyticus [FNGN]
20214
20286
+
Thr
CGT
[ENA]
¡û
>W1710538114
FNUH01000010
Bacillota
Streptococcus gallolyticus [FNUH]
19746
19818
+
Thr
CGT
[ENA]
¡û
>W1710545446
FOBM01000010
Bacillota
Streptococcus gallolyticus [FOBM]
31778
31706
-
Thr
CGT
[ENA]
¡û
>W1710551956
FOGM01000016
Bacillota
Streptococcus gallolyticus [FOGM]
21183
21255
+
Thr
CGT
[ENA]
¡û
>W1710558559
FOLZ01000006
Bacillota
Streptococcus gallolyticus [FOLZ]
21004
21076
+
Thr
CGT
[ENA]
¡û
>W1710578357
FPBN01000008
Bacillota
Streptococcus gallolyticus [FPBN]
21010
21082
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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