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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463344 (27 seq.)
>W1710882449
LMTZ01000039
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
9872
9797
-
Ala
TGC
[ENA]
¡û
>W1710882451
LMTZ01000039
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
3628
3553
-
Ala
TGC
[ENA]
¡û
>W1710882471
LMTZ01000111
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
34908
34834
-
Ala
TGC
[ENA]
¡û
>W1711178879
LWHC01000100
Cyanobacteriota
Cyanobacterium sp. IPPAS B-1200 [LWHC]
3177
3103
-
Ala
TGC
[ENA]
¡û
>W141038329
ALVO01000007
Cyanobacteriota
Geminocystis herdmanii PCC 6308 [ALVO]
395441
395515
+
Ala
TGC
[ENA]
¡û
>W141150878
AXAQ01000582
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
580
506
-
Ala
TGC
[ENA]
¡û
>W141150880
AXAQ01000724
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
3151
3076
-
Ala
TGC
[ENA]
¡û
>C181108377
CP024912
Cyanobacteriota
Cyanobacterium sp. HL-69 [CP024912]
29827
29901
+
Ala
TGC
-
¡û
>C181108385
CP024912
Cyanobacteriota
Cyanobacterium sp. HL-69 [CP024912]
1318997
1319071
+
Ala
TGC
-
¡û
>C181108394
CP024912
Cyanobacteriota
Cyanobacterium sp. HL-69 [CP024912]
2907969
2908043
+
Ala
TGC
-
¡û
>C161001509
AP014815
Cyanobacteriota
Geminocystis sp. NIES-3708 [AP014815]
3881512
3881438
-
Ala
TGC
[Ensembl]
¡û
>C161001521
AP014815
Cyanobacteriota
Geminocystis sp. NIES-3708 [AP014815]
2358806
2358732
-
Ala
TGC
[Ensembl]
¡û
>C161001528
AP014815
Cyanobacteriota
Geminocystis sp. NIES-3708 [AP014815]
756510
756436
-
Ala
TGC
[Ensembl]
¡û
>C161001548
AP014821
Cyanobacteriota
Geminocystis sp. NIES-3709 [AP014821]
4145725
4145797
+
Ala
TGC
[Ensembl]
¡û
>C161001562
AP014821
Cyanobacteriota
Geminocystis sp. NIES-3709 [AP014821]
2196468
2196396
-
Ala
TGC
[Ensembl]
¡û
>C161001564
AP014821
Cyanobacteriota
Geminocystis sp. NIES-3709 [AP014821]
2112706
2112634
-
Ala
TGC
[Ensembl]
¡û
>C131010176
CP003940
Cyanobacteriota
Cyanobacterium stanieri PCC 7202 [CP003940]
1169478
1169552
+
Ala
TGC
[Ensembl]
¡û
>C131010185
CP003940
Cyanobacteriota
Cyanobacterium stanieri PCC 7202 [CP003940]
3143299
3143373
+
Ala
TGC
[Ensembl]
¡û
>C131010194
CP003940
Cyanobacteriota
Cyanobacterium stanieri PCC 7202 [CP003940]
1433713
1433639
-
Ala
TGC
[Ensembl]
¡û
>W1610744375
LMTZ01000039
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
9872
9797
-
Ala
TGC
[ENA]
¡û
>W1610744377
LMTZ01000039
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
3628
3553
-
Ala
TGC
[ENA]
¡û
>W1610744397
LMTZ01000111
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
34908
34834
-
Ala
TGC
[ENA]
¡û
>ENV000539
AF547626
Environmental sample from ENV division of INSDC
199
276
+
Ala
TGC
[ENA]
>ENV000547
AF547630
Environmental sample from ENV division of INSDC
199
276
+
Ala
TGC
[ENA]
>ENV000551
AF547632
Environmental sample from ENV division of INSDC
199
276
+
Ala
TGC
[ENA]
>ENV000553
AF547633
Environmental sample from ENV division of INSDC
199
276
+
Ala
TGC
[ENA]
>ENV003954
DQ181751
Environmental sample from ENV division of INSDC
198
275
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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