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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463354 (21 seq.)
>W1711081247
LSSA01000340
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
6083
6158
+
His
GTG
[ENA]
¡û
>W131089981
AOFE01000036
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
98813
98886
+
His
GTG
[ENA]
¡û
>w021708
AAVW01000080
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
5047
4970
-
His
GTG
[ENA]
¡û
>W141022903
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
407357
407432
+
His
GTG
[ENA]
¡û
>W141038769
ALWD01000140
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
31929
32002
+
His
GTG
[ENA]
¡û
>WENV170002286
AGSF01004755
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
656
583
-
His
GTG
[ENA]
¢þ
>WENV170640287
JFJP01016968
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1636
1563
-
His
GTG
[ENA]
¢þ
>WENV170998721
MWWJ01088531
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
488
415
-
His
GTG
[ENA]
¢þ
>WENV171003437
NNBU01000022
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
11474
11549
+
His
GTG
[ENA]
¢þ
>WENV171003703
NNBV01000426
[NNBV] plant metagenome; symbiotic tissue sample KVS11
10223
10148
-
His
GTG
[ENA]
¢þ
>C181043640
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
3290044
3289971
-
His
GTG
-
¡û
>C181105242
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
5791629
5791556
-
His
GTG
-
¡û
>C181137796
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
906672
906745
+
His
GTG
-
¡û
>C191001282
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4431677
4431604
-
His
GTG
-
¡û
>C191083016
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
1374574
1374647
+
His
GTG
-
¡û
>W1910008397
BDGE01000023
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
199955
199882
-
His
GTG
[ENA]
¡û
>C161005333
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
2448670
2448743
+
His
GTG
[Ensembl]
¡û
>C131004191
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3265138
3265065
-
His
GTG
[Ensembl]
¡û
>C131010337
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
4183485
4183412
-
His
GTG
[Ensembl]
¡û
>W1610979411
LWAJ01000267
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
44517
44442
-
His
GTG
[ENA]
¡û
>W1710087991
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
2882670
2882595
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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