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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463415 (13 seq.)
>W131228750
AUGE01000034
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
8099
8174
+
Thr
GGT
[ENA]
¡û
>C009992
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
682346
682421
+
Thr
GGT
[Ensembl]
¡û
>w024810
AAZA01000030
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
5594
5671
+
Thr
GGT
[ENA]
¡û
>W141076077
ATBO01000081
Thermodesulfobacteriota
Desulfuromonas sp. TF [ATBO]
15370
15445
+
Thr
GGT
[ENA]
¡û
>W08010655
ABRF01000013
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
16675
16603
-
Thr
GGT
[ENA]
¡û
>C08005184
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1079861
1079936
+
Thr
GGT
[Ensembl]
¡û
>WENV170661451
JXWV01028445
[JXWV] soil metagenome; rice field; organic FYM Plot
339
414
+
Thr
GGT
[ENA]
¢þ
>W09100189
AAAS03000001
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
302400
302475
+
Thr
GGT
[ENA]
¡û
>C09106413
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3869825
3869750
-
Thr
GGT
[Ensembl]
¡û
>C151059719
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
725720
725795
+
Thr
GGT
[Ensembl]
¡û
>C161082912
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
1202693
1202768
+
Thr
GGT
[Ensembl]
¡û
>W121010748
AGJM01000062
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
11757
11832
+
Thr
GGT
[ENA]
¡û
>W1710087198
BDQG01000002
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
45156
45081
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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