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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463518 (46 seq.)
>W1710793524
LJPL01000006
Bacillota
Streptococcus pasteurianus [LJPL]
253
327
+
His
GTG
[ENA]
¡û
>W1710989086
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
914254
914328
+
His
GTG
[ENA]
¡û
>WENV180116429
OAQU01002735
[OAQU] human gut metagenome; ENVO:feces
167
241
+
His
GTG
[ENA]
¢þ
>WENV180116463
OAQV01000014
[OAQV] human gut metagenome; ENVO:feces
853
927
+
His
GTG
[ENA]
¢þ
>WENV180415642
OBVF01000033
[OBVF] human gut metagenome; faeces
584
658
+
His
GTG
[ENA]
¢þ
>WENV181555278
OGIT01000580
[OGIT] metagenome; Human gut stool
14451
14525
+
His
GTG
[ENA]
¢þ
>WENV181557987
OGIW01000982
[OGIW] metagenome; Human gut stool
14459
14533
+
His
GTG
[ENA]
¢þ
>WENV181879728
OGXF01001716
[OGXF] human gut metagenome; faeces
14453
14527
+
His
GTG
[ENA]
¢þ
>WENV181887619
OGXL01010026
[OGXL] human gut metagenome; faeces
3287
3361
+
His
GTG
[ENA]
¢þ
>WENV181948509
OGZE01005600
[OGZE] human gut metagenome; faeces
3005
3079
+
His
GTG
[ENA]
¢þ
>WENV181965192
OGZS01002529
[OGZS] human gut metagenome; faeces
1468
1542
+
His
GTG
[ENA]
¢þ
>WENV181977252
OHAD01032768
[OHAD] human gut metagenome; faeces
865
939
+
His
GTG
[ENA]
¢þ
>WENV181998337
OHAU01055178
[OHAU] human gut metagenome; faeces
579
653
+
His
GTG
[ENA]
¢þ
>W141204914
AZJT01000084
Bacillota
Streptococcus thermophilus M17PTZA496 [AZJT]
299
373
+
His
GTG
[ENA]
¡û
>WENV182140658
OHKR01000557
[OHKR] human gut metagenome; feces
3042
3116
+
His
GTG
[ENA]
¢þ
>WENV182185615
OHOG01000005
[OHOG] human gut metagenome; feces
11077
11151
+
His
GTG
[ENA]
¢þ
>WENV182230118
OHRK01000791
[OHRK] human gut metagenome; feces
2157
2231
+
His
GTG
[ENA]
¢þ
>WENV182814553
OJYK01000383
[OJYK] human gut metagenome; human gut
12763
12689
-
His
GTG
[ENA]
¢þ
>WENV182820237
OKAL01000059
[OKAL] human gut metagenome; human gut
14459
14533
+
His
GTG
[ENA]
¢þ
>WENV182842412
OKIE01000088
[OKIE] human gut metagenome; human gut
14459
14533
+
His
GTG
[ENA]
¢þ
>WENV182842452
OKIE01000617
[OKIE] human gut metagenome; human gut
1375
1449
+
His
GTG
[ENA]
¢þ
>WENV182842788
OKIG01000753
[OKIG] human gut metagenome; human gut
1667
1593
-
His
GTG
[ENA]
¢þ
>WENV182856229
OKNJ01000006
[OKNJ] human gut metagenome; human gut
90251
90177
-
His
GTG
[ENA]
¢þ
>WENV183602866
OODK01000274
[OODK] human gut metagenome; human gut
223
297
+
His
GTG
[ENA]
¢þ
>WENV183606533
OODN01012923
[OODN] human gut metagenome; human gut
1018
944
-
His
GTG
[ENA]
¢þ
>WENV183611054
OODS01037276
[OODS] human gut metagenome; human gut
639
713
+
His
GTG
[ENA]
¢þ
>C181214976
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
84910
84984
+
His
GTG
-
¡û
>C191166392
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
93082
93156
+
His
GTG
-
¡û
>W141727304
JNCV01000006
Bacillota
Streptococcus macedonicus [JNCV]
169
243
+
His
GTG
[ENA]
¡û
>W1810069569
PEBL01000011
Bacillota
Streptococcus macedonicus 211MA [PEBL]
897
971
+
His
GTG
[ENA]
¡û
>W1810069624
PEBM01000050
Bacillota
Streptococcus macedonicus 27MV [PEBM]
50385
50311
-
His
GTG
[ENA]
¡û
>W1810069655
PEBN01000024
Bacillota
Streptococcus macedonicus 19AS [PEBN]
731
805
+
His
GTG
[ENA]
¡û
>W1810188072
PKIB01000009
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
58880
58806
-
His
GTG
[ENA]
¡û
>W1810904657
QVEM01000027
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
144
218
+
His
GTG
[ENA]
¡û
>W1810905303
QVEY01000038
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
144
218
+
His
GTG
[ENA]
¡û
>W1810907438
QVHT01000004
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
138
212
+
His
GTG
[ENA]
¡û
>W1810907652
QVHX01000015
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
138
212
+
His
GTG
[ENA]
¡û
>W1510069676
CDEY01000029
Bacillota
Streptococcus pasteurianus HC-2909-2 [CDEY]
264
338
+
His
GTG
[ENA]
¡û
>W10127551
AEEL01000002
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
167
241
+
His
GTG
[ENA]
¡û
>C11121166
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
78595
78669
+
His
GTG
[Ensembl]
¡û
>W1511447397
JUYN01000058
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
146
72
-
His
GTG
[ENA]
¡û
>W11135039
AEEL01000002
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
167
241
+
His
GTG
[ENA]
¡û
>C121017991
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
85876
85950
+
His
GTG
[Ensembl]
¡û
>C161059309
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1878428
1878354
-
His
GTG
[Ensembl]
¡û
>W1610514137
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
11625
11699
+
His
GTG
[ENA]
¡û
>W1610843962
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
914254
914328
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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