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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463603 (21 seq.)
>C017523
CR354531
Gammaproteobacteria
Photobacterium profundum [CR354531]
363092
363167
+
Val
TAC
[Ensembl]
¡û
>C017528
CR354531
Gammaproteobacteria
Photobacterium profundum [CR354531]
531388
531463
+
Val
TAC
[Ensembl]
¡û
>C017534
CR354531
Gammaproteobacteria
Photobacterium profundum [CR354531]
781461
781536
+
Val
TAC
[Ensembl]
¡û
>C017589
CR354531
Gammaproteobacteria
Photobacterium profundum [CR354531]
4029942
4029867
-
Val
TAC
[Ensembl]
¡û
>C017626
CR354531
Gammaproteobacteria
Photobacterium profundum [CR354531]
3360957
3360882
-
Val
TAC
[Ensembl]
¡û
>W141231011
BATM01000062
Gammaproteobacteria
Vibrio ezurae NBRC 102218 [BATM]
1856
1931
+
Val
TAC
[ENA]
¡û
>W141231015
BATM01000067
Gammaproteobacteria
Vibrio ezurae NBRC 102218 [BATM]
350
275
-
Val
TAC
[ENA]
¡û
>W141231673
BAUJ01000109
Gammaproteobacteria
Vibrio halioticoli NBRC 102217 [BAUJ]
367
442
+
Val
TAC
[ENA]
¡û
>WENV170012505
ASRK01010365
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
192
267
+
Val
TAC
[ENA]
¢þ
>WENV170704349
LLEJ01004613
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
697
772
+
Val
TAC
[ENA]
¢þ
>WENV170704363
LLEJ01004756
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
331
406
+
Val
TAC
[ENA]
¢þ
>C181169235
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
1086717
1086792
+
Val
TAC
-
¡û
>C181169237
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
1086933
1087008
+
Val
TAC
-
¡û
>C181169239
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
1087148
1087223
+
Val
TAC
-
¡û
>C181169241
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
1087363
1087438
+
Val
TAC
-
¡û
>C181169243
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
1087580
1087655
+
Val
TAC
-
¡û
>C181169245
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
1087796
1087871
+
Val
TAC
-
¡û
>W1910007165
BCUP01000001
Gammaproteobacteria
Vibrio halioticoli IAM 14596 [BCUP]
1958919
1958844
-
Val
TAC
[ENA]
¡û
>W1810406967
PYMJ01000111
Gammaproteobacteria
Photobacterium frigidiphilum JCM 12947 [PYMJ]
1045
970
-
Val
TAC
[ENA]
¡û
>W1810406971
PYMJ01000122
Gammaproteobacteria
Photobacterium frigidiphilum JCM 12947 [PYMJ]
601
526
-
Val
TAC
[ENA]
¡û
>W1810406982
PYMJ01000134
Gammaproteobacteria
Photobacterium frigidiphilum JCM 12947 [PYMJ]
608
533
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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