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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463653 (110 seq.)
>W1711069186
LSFL01000041
Bacteroidota
Polaribacter reichenbachii [LSFL]
5766
5691
-
Gly
TCC
[ENA]
¡û
>W1711069200
LSFM01000019
Bacteroidota
Polaribacter vadi [LSFM]
117367
117442
+
Gly
TCC
[ENA]
¡û
>W1711305177
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1449553
1449480
-
Gly
TCC
[ENA]
¡û
>W1711305178
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1449436
1449361
-
Gly
TCC
[ENA]
¡û
>W1711305179
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1449320
1449245
-
Gly
TCC
[ENA]
¡û
>W1711305203
MAKX01000002
Bacteroidota
Tenacibaculum soleae [MAKX]
312684
312609
-
Gly
TCC
[ENA]
¡û
>W131175285
ARJD01000049
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
30964
30889
-
Gly
TCC
[ENA]
¡û
>W131175300
ARJD01000063
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
9402
9327
-
Gly
TCC
[ENA]
¡û
>W131236222
AUMF01000010
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
50111
50036
-
Gly
TCC
[ENA]
¡û
>W131236223
AUMF01000010
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
49996
49921
-
Gly
TCC
[ENA]
¡û
>W131236236
AUMF01000019
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
75458
75383
-
Gly
TCC
[ENA]
¡û
>W1712097624
NIDK01000014
Bacteroidota
Polaribacter haliotis [NIDK]
117287
117362
+
Gly
TCC
[ENA]
¡û
>W1712097639
NIDL01000002
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
6810
6885
+
Gly
TCC
[ENA]
¡û
>C171063264
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
41036
40961
-
Gly
TCC
-
¡û
>C171074143
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
1369028
1368953
-
Gly
TCC
-
¡û
>C171074148
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
409440
409365
-
Gly
TCC
-
¡û
>C171094200
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
3899814
3899889
+
Gly
TCC
-
¡û
>C171098457
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
1222437
1222512
+
Gly
TCC
-
¡û
>w014191
AAOG01000003
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
428028
428103
+
Gly
TCC
[ENA]
¡û
>w013087
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
19602
19530
-
Gly
TCC
[ENA]
¡û
>WENV180356593
OBNL01000034
[OBNL] marine metagenome; ENVO:00002010
17408
17481
+
Gly
TCC
[ENA]
¢þ
>WENV180383151
OBOU01003944
[OBOU] marine metagenome; ENV:00002010
972
899
-
Gly
TCC
[ENA]
¢þ
>WENV180383749
OBOV01016208
[OBOV] marine metagenome; ENV:00002010
351
424
+
Gly
TCC
[ENA]
¢þ
>WENV182547366
OJBS01001162
[OJBS] seawater metagenome; Sea water
146
219
+
Gly
TCC
[ENA]
¢þ
>WENV182547757
OJBT01002302
[OJBT] seawater metagenome; Sea water
1629
1556
-
Gly
TCC
[ENA]
¢þ
>WENV182558209
OJDL01014701
[OJDL] seawater metagenome; Sea water
704
631
-
Gly
TCC
[ENA]
¢þ
>WENV182558673
OJDN01000454
[OJDN] seawater metagenome; Sea water
8282
8355
+
Gly
TCC
[ENA]
¢þ
>WENV182560343
OJDU01000031
[OJDU] seawater metagenome; Sea water
33838
33911
+
Gly
TCC
[ENA]
¢þ
>WENV182567455
OJEO01001345
[OJEO] seawater metagenome; Sea water
1325
1252
-
Gly
TCC
[ENA]
¢þ
>WENV182590743
OJIK01000177
[OJIK] seawater metagenome; Sea water
14177
14250
+
Gly
TCC
[ENA]
¢þ
>WENV182593099
OJIS01046006
[OJIS] seawater metagenome; Sea water
79
152
+
Gly
TCC
[ENA]
¢þ
>WENV183056093
OLHI01000045
[OLHI] seawater metagenome; Sea water
32471
32544
+
Gly
TCC
[ENA]
¢þ
>WENV183061246
OLHZ01001764
[OLHZ] seawater metagenome; Sea water
3378
3451
+
Gly
TCC
[ENA]
¢þ
>WENV183062415
OLID01009353
[OLID] seawater metagenome; Sea water
711
638
-
Gly
TCC
[ENA]
¢þ
>WENV183064865
OLII01001897
[OLII] seawater metagenome; Sea water
964
1037
+
Gly
TCC
[ENA]
¢þ
>WENV183615810
OOEB01160998
[OOEB] marine metagenome; sea ice
266
193
-
Gly
TCC
[ENA]
¢þ
>WENV183620682
OOFS01012727
[OOFS] marine metagenome; sea ice
342
269
-
Gly
TCC
[ENA]
¢þ
>WENV183625599
OOGG01002962
[OOGG] marine metagenome; sea ice
720
647
-
Gly
TCC
[ENA]
¢þ
>WENV183625822
OOGG01042810
[OOGG] marine metagenome; sea ice
282
209
-
Gly
TCC
[ENA]
¢þ
>WENV170296694
CESE01037698
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4732
4657
-
Gly
TCC
[ENA]
¢þ
>WENV170326004
CEST01082594
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
467
542
+
Gly
TCC
[ENA]
¢þ
>WENV170538284
CEWR01066788
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1821
1746
-
Gly
TCC
[ENA]
¢þ
>WENV170538984
CEWR01140406
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
26912
26837
-
Gly
TCC
[ENA]
¢þ
>WENV170569778
FLMP01299867
[FLMP] seawater metagenome; seawater
27
102
+
Gly
TCC
[ENA]
¢þ
>WENV170617437
FUWD012926249
[FUWD] metagenome; unknown
225
150
-
Gly
TCC
[ENA]
¢þ
>WENV170626778
FUWD013229417
[FUWD] metagenome; unknown
7952
8027
+
Gly
TCC
[ENA]
¢þ
>WENV170627452
FUWD013232840
[FUWD] metagenome; unknown
32753
32828
+
Gly
TCC
[ENA]
¢þ
>WENV170783277
MAAC01015566
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7679
7606
-
Gly
TCC
[ENA]
¢þ
>WENV170783299
MAAC01015657
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
49302
49377
+
Gly
TCC
[ENA]
¢þ
>WENV170783475
MAAC01017361
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
323
248
-
Gly
TCC
[ENA]
¢þ
>WENV170783575
MAAC01017941
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
98
23
-
Gly
TCC
[ENA]
¢þ
>WENV170783824
MAAC01019052
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9529
9604
+
Gly
TCC
[ENA]
¢þ
>WENV170783825
MAAC01019052
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9810
9885
+
Gly
TCC
[ENA]
¢þ
>WENV170919450
MDTF01009037
[MDTF] marine metagenome; seawater
9636
9561
-
Gly
TCC
[ENA]
¢þ
>C181113431
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
54994
54921
-
Gly
TCC
-
¡û
>W141563414
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
3968403
3968478
+
Gly
TCC
[ENA]
¡û
>W1910796637
MSCN01000001
Bacteroidota
Polaribacter porphyrae NBRC 108759 [MSCN]
1353343
1353416
+
Gly
TCC
[ENA]
¡û
>W1911501236
OENA01000003
Bacteroidota
Tenacibaculum finnmarkense TNO006 [OENA]
182
109
-
Gly
TCC
[ENA]
¡û
>W1911501241
OENA01000013
Bacteroidota
Tenacibaculum finnmarkense TNO006 [OENA]
124174
124101
-
Gly
TCC
[ENA]
¡û
>W1911501254
OENA01000023
Bacteroidota
Tenacibaculum finnmarkense TNO006 [OENA]
131911
131838
-
Gly
TCC
[ENA]
¡û
>W1911501310
OENB01000012
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
148240
148167
-
Gly
TCC
[ENA]
¡û
>W1911501314
OENB01000023
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
4566
4639
+
Gly
TCC
[ENA]
¡û
>W1911501315
OENB01000023
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
4682
4755
+
Gly
TCC
[ENA]
¡û
>W1911501316
OENB01000023
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
4798
4871
+
Gly
TCC
[ENA]
¡û
>W1911501343
OENC01000036
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
4542
4615
+
Gly
TCC
[ENA]
¡û
>W1911501344
OENC01000036
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
4658
4731
+
Gly
TCC
[ENA]
¡û
>W1911501366
OENC01000056
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
144888
144815
-
Gly
TCC
[ENA]
¡û
>W1911501403
OEND01000033
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
5658
5585
-
Gly
TCC
[ENA]
¡û
>W1911501404
OEND01000033
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
5540
5467
-
Gly
TCC
[ENA]
¡û
>W1911501405
OEND01000033
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
5423
5350
-
Gly
TCC
[ENA]
¡û
>W1911501412
OEND01000067
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
63085
63158
+
Gly
TCC
[ENA]
¡û
>W1911501423
OENF01000001
Bacteroidota
Tenacibaculum piscium TNO020 [OENF]
75222
75149
-
Gly
TCC
[ENA]
¡û
>W1911501424
OENF01000008
Bacteroidota
Tenacibaculum piscium TNO020 [OENF]
87
14
-
Gly
TCC
[ENA]
¡û
>W1911501432
OENF01000010
Bacteroidota
Tenacibaculum piscium TNO020 [OENF]
265402
265329
-
Gly
TCC
[ENA]
¡û
>W1911504338
OESZ01000002
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
4746
4819
+
Gly
TCC
[ENA]
¡û
>W1911504339
OESZ01000002
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
4862
4935
+
Gly
TCC
[ENA]
¡û
>W1911504340
OESZ01000002
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
4978
5051
+
Gly
TCC
[ENA]
¡û
>W1911504371
OESZ01000044
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
47004
47077
+
Gly
TCC
[ENA]
¡û
>W1810156061
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1837982
1838055
+
Gly
TCC
[ENA]
¡û
>W1810156082
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1993183
1993108
-
Gly
TCC
[ENA]
¡û
>W1810156083
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1993067
1992992
-
Gly
TCC
[ENA]
¡û
>W1810156084
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1992951
1992878
-
Gly
TCC
[ENA]
¡û
>W1810173114
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
1654860
1654933
+
Gly
TCC
[ENA]
¡û
>W1810586313
QFFG01000004
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
331048
331121
+
Gly
TCC
[ENA]
¡û
>W1810756009
QPEJ01000011
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
25193
25266
+
Gly
TCC
[ENA]
¡û
>WENV030195
AACY021263856
Marine microbial communities from Global Ocean Sampling (GOS)
579
654
+
Gly
TCC
[ENA]
>W1511296875
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1670704
1670629
-
Gly
TCC
[ENA]
¡û
>W1511297078
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
20928
20853
-
Gly
TCC
[ENA]
¡û
>W1511576842
LAQA01000060
Bacteroidota
Flavobacteriaceae bacterium ASP10-09a [LAQA]
4428
4353
-
Gly
TCC
[ENA]
¡û
>W1511694598
LGBR01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [LGBR]
1994959
1994884
-
Gly
TCC
[ENA]
¡û
>C161059123
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
2189557
2189482
-
Gly
TCC
[Ensembl]
¡û
>C161059133
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
672122
672049
-
Gly
TCC
[Ensembl]
¡û
>C161059134
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
672005
671932
-
Gly
TCC
[Ensembl]
¡û
>C161059135
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
671888
671813
-
Gly
TCC
[Ensembl]
¡û
>W1610080934
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
10
85
+
Gly
TCC
[ENA]
¡û
>W1610080935
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
126
201
+
Gly
TCC
[ENA]
¡û
>W1610080936
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
241
316
+
Gly
TCC
[ENA]
¡û
>W1610080944
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
77667
77592
-
Gly
TCC
[ENA]
¡û
>C131013450
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
13720
13645
-
Gly
TCC
[Ensembl]
¡û
>W1610909714
LSFL01000041
Bacteroidota
Polaribacter reichenbachii [LSFL]
5766
5691
-
Gly
TCC
[ENA]
¡û
>W1610909728
LSFM01000019
Bacteroidota
Polaribacter vadi [LSFM]
117367
117442
+
Gly
TCC
[ENA]
¡û
>W1611054719
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1449553
1449480
-
Gly
TCC
[ENA]
¡û
>W1611054720
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1449436
1449361
-
Gly
TCC
[ENA]
¡û
>W1611054721
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1449320
1449245
-
Gly
TCC
[ENA]
¡û
>W1611054745
MAKX01000002
Bacteroidota
Tenacibaculum soleae [MAKX]
312684
312609
-
Gly
TCC
[ENA]
¡û
>W1710079585
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
10
85
+
Gly
TCC
[ENA]
¡û
>W1710079586
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
126
201
+
Gly
TCC
[ENA]
¡û
>W1710079587
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
241
316
+
Gly
TCC
[ENA]
¡û
>W1710079595
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
77667
77592
-
Gly
TCC
[ENA]
¡û
>W1710538009
FNUE01000002
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
13924
13849
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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