This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463660 (89 seq.)
>W1710861857
LMDY01000007
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
16637
16562
-
Trp
CCA
[ENA]
¡û
>W1710944148
LOQE01000044
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
199
274
+
Trp
CCA
[ENA]
¡û
>W1711082109
LSTO01000014
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
19205
19130
-
Trp
CCA
[ENA]
¡û
>W1711268787
LZDH01000015
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
519
594
+
Trp
CCA
[ENA]
¡û
>W1711343192
MCIC01000005
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
66104
66029
-
Trp
CCA
[ENA]
¡û
>W1711385296
MEEA01000117
Betaproteobacteria
Hydrogenophaga sp. SCN 70-13 [MEEA]
139
214
+
Trp
CCA
[ENA]
¡û
>W1711394912
MESO01000004
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
86648
86573
-
Trp
CCA
[ENA]
¡û
>W1711453678
MIYM01000009
Betaproteobacteria
Hydrogenophaga sp. PML113 [MIYM]
212732
212657
-
Trp
CCA
[ENA]
¡û
>W131050820
AMXC01000008
Betaproteobacteria
Thauera sp. 63 [AMXC]
42926
43001
+
Trp
CCA
[ENA]
¡û
>W131171379
ARGE01000019
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
512
587
+
Trp
CCA
[ENA]
¡û
>W131176300
ARJX01000048
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
121233
121308
+
Trp
CCA
[ENA]
¡û
>W131236712
AUMO01000118
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
129
204
+
Trp
CCA
[ENA]
¡û
>C171060614
CP017311
Betaproteobacteria
Hydrogenophaga sp. PBC [CP017311]
4423770
4423695
-
Trp
CCA
-
¡û
>C013930
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
3667353
3667278
-
Trp
CCA
[Ensembl]
¡û
>WENV180019278
FTBS01000610
[FTBS] metagenome; soil
115
190
+
Trp
CCA
[ENA]
¢þ
>WENV180023953
FTIF01004989
[FTIF] metagenome; soil
5142
5067
-
Trp
CCA
[ENA]
¢þ
>WENV180026001
FTIR01002178
[FTIR] metagenome; soil
12
87
+
Trp
CCA
[ENA]
¢þ
>WENV180026111
FTIR01082437
[FTIR] metagenome; soil
229
304
+
Trp
CCA
[ENA]
¢þ
>WENV180028049
FTIZ01586080
[FTIZ] metagenome; soil
340
265
-
Trp
CCA
[ENA]
¢þ
>WENV180030730
FTJN01005366
[FTJN] metagenome; soil
228
303
+
Trp
CCA
[ENA]
¢þ
>WENV180032815
FTKD01001348
[FTKD] metagenome; soil
4953
4878
-
Trp
CCA
[ENA]
¢þ
>WENV180032996
FTKD01029315
[FTKD] metagenome; soil
670
745
+
Trp
CCA
[ENA]
¢þ
>WENV180035107
FTKT01002052
[FTKT] metagenome; soil
11326
11251
-
Trp
CCA
[ENA]
¢þ
>WENV180041191
LLBZ010061905
[LLBZ] soil metagenome; soil from tomato rhizosphere
730
655
-
Trp
CCA
[ENA]
¢þ
>WENV181368575
OFQM01000590
[OFQM] freshwater metagenome; Freshwater Lake
1049
1124
+
Trp
CCA
[ENA]
¢þ
>WENV181370313
OFQS01003036
[OFQS] freshwater metagenome; Freshwater Lake
463
538
+
Trp
CCA
[ENA]
¢þ
>WENV181378620
OFRB01036021
[OFRB] wastewater metagenome; Exp Tend CN 0WW
64
139
+
Trp
CCA
[ENA]
¢þ
>WENV181410900
OGCI01008074
[OGCI] hot springs metagenome; Hot spring water
3433
3358
-
Trp
CCA
[ENA]
¢þ
>WENV181416253
OGCL01065516
[OGCL] hot springs metagenome; Hot spring water
98
173
+
Trp
CCA
[ENA]
¢þ
>WENV181844208
OGVV01021473
[OGVV] freshwater metagenome; freshwater
197
272
+
Trp
CCA
[ENA]
¢þ
>W141207211
AZND01000069
Betaproteobacteria
Methylibium sp. T29 [AZND]
18
93
+
Trp
CCA
[ENA]
¡û
>W141212848
AZRA01000053
Betaproteobacteria
Sphaerotilus natans subsp. natans DSM 6575 [AZRA]
39
114
+
Trp
CCA
[ENA]
¡û
>W141214254
AZSN01000085
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
18
93
+
Trp
CCA
[ENA]
¡û
>W141223633
BADL01000074
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
6544
6619
+
Trp
CCA
[ENA]
¡û
>W141260616
CCAE010000006
Betaproteobacteria
Hydrogenophaga intermedia [CCAE]
143400
143325
-
Trp
CCA
[ENA]
¡û
>C08005946
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
4346744
4346672
-
Trp
CCA
[Ensembl]
¡û
>WENV170551153
CXWJ01000615
[CXWJ] wastewater metagenome; activated sludge
121
196
+
Trp
CCA
[ENA]
¢þ
>WENV170553821
CXWK01032234
[CXWK] wastewater metagenome; activated sludge
1497
1422
-
Trp
CCA
[ENA]
¢þ
>WENV170557846
CXWL01040139
[CXWL] groundwater metagenome; biofilm material
12157
12082
-
Trp
CCA
[ENA]
¢þ
>WENV170573153
FLYJ01001235
[FLYJ] hot springs metagenome; Sediment
2032
1957
-
Trp
CCA
[ENA]
¢þ
>WENV170649560
JRYC01021160
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
136
61
-
Trp
CCA
[ENA]
¢þ
>WENV170651070
JRYF01000438
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15187
15112
-
Trp
CCA
[ENA]
¢þ
>WENV170651818
JRYG01004308
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
3
78
+
Trp
CCA
[ENA]
¢þ
>WENV170653443
JRYJ01000977
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
81
156
+
Trp
CCA
[ENA]
¢þ
>WENV170710873
LNFM01002889
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8197
8122
-
Trp
CCA
[ENA]
¢þ
>WENV170713492
LNFM01032860
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3990
3915
-
Trp
CCA
[ENA]
¢þ
>WENV170713924
LNFM01046817
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
107
182
+
Trp
CCA
[ENA]
¢þ
>W09101380
AAEM01000002
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
28574
28649
+
Trp
CCA
[ENA]
¡û
>C181042969
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
471911
471986
+
Trp
CCA
-
¡û
>C181165131
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
383513
383588
+
Trp
CCA
-
¡û
>C181176177
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
192758
192833
+
Trp
CCA
-
¡û
>C181176783
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
465982
466057
+
Trp
CCA
-
¡û
>C191019175
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
4216424
4216349
-
Trp
CCA
-
¡û
>C191064755
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
1511938
1511863
-
Trp
CCA
-
¡û
>C191154107
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
4511552
4511477
-
Trp
CCA
-
¡û
>W1910175615
BJCL01000021
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
61693
61618
-
Trp
CCA
[ENA]
¡û
>W1911114388
NOIH01000029
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
514
589
+
Trp
CCA
[ENA]
¡û
>W1911701447
QNUI01000083
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
112
187
+
Trp
CCA
[ENA]
¡û
>W1911702196
QOAZ01000052
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
109
184
+
Trp
CCA
[ENA]
¡û
>W1911775038
QXMG01000091
Betaproteobacteria
Caldimonas tepidiphila YIM 730274 [QXMG]
75
150
+
Trp
CCA
[ENA]
¡û
>SRA1001844
SRR001308.87005
Metagenomic characterization of a wastewater treatment plant (SRP000180)
69
144
+
Trp
CCA
[SRA]
>W1810273339
PSNY01000033
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
17095
17020
-
Trp
CCA
[ENA]
¡û
>W1810354960
PVLQ01000007
Betaproteobacteria
Malikia granosa P1 [PVLQ]
99919
99844
-
Trp
CCA
[ENA]
¡û
>W1810355026
PVLR01000003
Betaproteobacteria
Malikia spinosa 83 [PVLR]
109
184
+
Trp
CCA
[ENA]
¡û
>W1810762768
QQAP01000010
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
116297
116222
-
Trp
CCA
[ENA]
¡û
>W1810912340
QVLS01000004
Betaproteobacteria
Hydrogenophaga borbori LA-38 [QVLS]
133
208
+
Trp
CCA
[ENA]
¡û
>C151076189
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
4507060
4506985
-
Trp
CCA
-
¡û
>C151081687
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
5760375
5760300
-
Trp
CCA
[Ensembl]
¡û
>W1511403264
JTKY01000077
Betaproteobacteria
Tepidimonas taiwanensis VT154-175 [JTKY]
28880
28805
-
Trp
CCA
[ENA]
¡û
>W1511683551
LFLF01000070
Betaproteobacteria
Candidatus Paraburkholderia calva calva UZHbot6 [LFLF]
20493
20418
-
Trp
CCA
[ENA]
¡û
>W1511686440
LFRJ01000014
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
884508
884433
-
Trp
CCA
[ENA]
¡û
>C161075118
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
2479710
2479635
-
Trp
CCA
[Ensembl]
¡û
>W121070108
AJWL01000022
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
40445
40370
-
Trp
CCA
[ENA]
¡û
>WENV062041
AACY023446955
Marine microbial communities from Global Ocean Sampling (GOS)
397
320
-
Trp
CCA
[ENA]
>W1610070264
BCTC01000129
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
35
110
+
Trp
CCA
[ENA]
¡û
>W1610070405
BCTF01000037
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
132
207
+
Trp
CCA
[ENA]
¡û
>W1610070544
BCTI01000039
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
51079
51004
-
Trp
CCA
[ENA]
¡û
>W1610074418
BCWQ01000020
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
64060
63985
-
Trp
CCA
[ENA]
¡û
>C131000317
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
4438629
4438554
-
Trp
CCA
[Ensembl]
¡û
>W1610724203
LMDY01000007
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
16637
16562
-
Trp
CCA
[ENA]
¡û
>W1610800448
LOQE01000044
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
199
274
+
Trp
CCA
[ENA]
¡û
>W1611029599
LZDH01000015
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
519
594
+
Trp
CCA
[ENA]
¡û
>W1710067637
BCTC01000129
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
35
110
+
Trp
CCA
[ENA]
¡û
>W1710067778
BCTF01000037
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
132
207
+
Trp
CCA
[ENA]
¡û
>W1710067917
BCTI01000039
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
51079
51004
-
Trp
CCA
[ENA]
¡û
>W1710071536
BCWQ01000020
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
64060
63985
-
Trp
CCA
[ENA]
¡û
>W1710547384
FOCW01000002
Betaproteobacteria
Brachymonas denitrificans DSM 15123 [FOCW]
1202
1277
+
Trp
CCA
[ENA]
¡û
>W1710595759
FTMD01000028
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
166
241
+
Trp
CCA
[ENA]
¡û
>W1710597119
FTMZ01000004
Betaproteobacteria
Sphaerotilus natans [FTMZ]
318675
318600
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK