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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463738 (51 seq.)
>W1711223907
LXTQ01000001
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
32202
32127
-
Asn
GTT
[ENA]
¡û
>W1711223908
LXTQ01000001
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
32107
32032
-
Asn
GTT
[ENA]
¡û
>W1711339989
MCAW01000003
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
229196
229121
-
Asn
GTT
[ENA]
¡û
>C171065598
CP017668
Betaproteobacteria
Jeongeupia sp. USM3 [CP017668]
1605523
1605448
-
Asn
GTT
-
¡û
>W131171837
ARGN01000026
Betaproteobacteria
Chitiniphilus shinanonensis DSM 23277 [ARGN]
5149
5074
-
Asn
GTT
[ENA]
¡û
>W131176260
ARJX01000029
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
90483
90558
+
Asn
GTT
[ENA]
¡û
>W131176261
ARJX01000029
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
90602
90677
+
Asn
GTT
[ENA]
¡û
>W131220476
ATZJ01000065
Betaproteobacteria
Chitinilyticum litopenaei DSM 21440 [ATZJ]
7399
7474
+
Asn
GTT
[ENA]
¡û
>W131220477
ATZJ01000065
Betaproteobacteria
Chitinilyticum litopenaei DSM 21440 [ATZJ]
7517
7592
+
Asn
GTT
[ENA]
¡û
>W131224061
AUCN01000011
Betaproteobacteria
Chitinibacter tainanensis DSM 15459 [AUCN]
94533
94458
-
Asn
GTT
[ENA]
¡û
>W131224062
AUCN01000011
Betaproteobacteria
Chitinibacter tainanensis DSM 15459 [AUCN]
94395
94320
-
Asn
GTT
[ENA]
¡û
>W131236940
AUMS01000003
Betaproteobacteria
Chitinilyticum aquatile DSM 21506 [AUMS]
38189
38114
-
Asn
GTT
[ENA]
¡û
>W131236941
AUMS01000003
Betaproteobacteria
Chitinilyticum aquatile DSM 21506 [AUMS]
38070
37995
-
Asn
GTT
[ENA]
¡û
>C001372
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
3240506
3240431
-
Asn
GTT
[Ensembl]
¡û
>C001373
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
3240391
3240316
-
Asn
GTT
[Ensembl]
¡û
>C013385
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
1662861
1662936
+
Asn
GTT
[Ensembl]
¡û
>WENV181144300
OEHO01001976
[OEHO] metagenome; unknown
1013
938
-
Asn
GTT
[ENA]
¢þ
>W141229530
BAMT01000001
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
573098
573023
-
Asn
GTT
[ENA]
¡û
>WENV183726834
PJTO01000226
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
3140
3215
+
Asn
GTT
[ENA]
¢þ
>WENV183729237
PJTQ01014297
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
423
498
+
Asn
GTT
[ENA]
¢þ
>WENV183736708
PJUD01000003
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
547201
547126
-
Asn
GTT
[ENA]
¢þ
>WENV183739274
PJUE01005717
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
305
380
+
Asn
GTT
[ENA]
¢þ
>WENV183740641
PJUF01005077
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
566
641
+
Asn
GTT
[ENA]
¢þ
>WENV170573449
FLYK01027897
[FLYK] hot springs metagenome; Sediment
242
317
+
Asn
GTT
[ENA]
¢þ
>WENV170574582
FLYN01000523
[FLYN] hot springs metagenome; Sediment
719
644
-
Asn
GTT
[ENA]
¢þ
>WENV170575135
FLYN01035640
[FLYN] hot springs metagenome; Sediment
438
363
-
Asn
GTT
[ENA]
¢þ
>WENV170654477
JRYL01000022
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
139326
139251
-
Asn
GTT
[ENA]
¢þ
>WENV170654523
JRYL01000170
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
87721
87796
+
Asn
GTT
[ENA]
¢þ
>WENV170654845
JRYL01038357
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
1101
1176
+
Asn
GTT
[ENA]
¢þ
>C191019167
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3338976
3339051
+
Asn
GTT
-
¡û
>C191019168
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3339096
3339171
+
Asn
GTT
-
¡û
>W09101035
AADX02000018
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
46495
46420
-
Asn
GTT
[ENA]
¡û
>W1910015417
BDOQ01000009
Betaproteobacteria
Novimethylophilus kurashikiensis La2-4 [BDOQ]
90888
90963
+
Asn
GTT
[ENA]
¡û
>C09107590
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
1358138
1358063
-
Asn
GTT
[Ensembl]
¡û
>C09107591
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
1358005
1357930
-
Asn
GTT
[Ensembl]
¡û
>W1910547749
FZOA01000005
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
169750
169825
+
Asn
GTT
[ENA]
¡û
>C11114223
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
1361645
1361570
-
Asn
GTT
[Ensembl]
¡û
>C11114224
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
1361512
1361437
-
Asn
GTT
[Ensembl]
¡û
>W1511403594
JTLG01000014
Betaproteobacteria
Chitinibacter sp. ZOR0017 [JTLG]
74
1
-
Asn
GTT
[ENA]
¡û
>W1511581013
LARU01000004
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
679966
680041
+
Asn
GTT
[ENA]
¡û
>W1511581014
LARU01000004
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
680081
680156
+
Asn
GTT
[ENA]
¡û
>C131000305
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
3223803
3223878
+
Asn
GTT
[Ensembl]
¡û
>C131000306
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
3223920
3223995
+
Asn
GTT
[Ensembl]
¡û
>W1610617606
LGUD01000010
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
324041
324116
+
Asn
GTT
[ENA]
¡û
>W1611008278
LXTQ01000001
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
32202
32127
-
Asn
GTT
[ENA]
¡û
>W1611008279
LXTQ01000001
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
32107
32032
-
Asn
GTT
[ENA]
¡û
>W1710595757
FTMD01000023
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
67982
67907
-
Asn
GTT
[ENA]
¡û
>W1710595758
FTMD01000023
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
67863
67788
-
Asn
GTT
[ENA]
¡û
>W1710605583
FWXD01000009
Betaproteobacteria
Andreprevotia lacus DSM 23236 [FWXD]
14007
14082
+
Asn
GTT
[ENA]
¡û
>W1710605584
FWXD01000009
Betaproteobacteria
Andreprevotia lacus DSM 23236 [FWXD]
14146
14221
+
Asn
GTT
[ENA]
¡û
>W1710743156
LGUD01000010
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
324041
324116
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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