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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463740 (71 seq.)
>W1710792890
LJOS01000074
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
10307
10235
-
Phe
GAA
[ENA]
¡û
>W1710792946
LJOV01000032
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
10840
10766
-
Phe
GAA
[ENA]
¡û
>W1710793002
LJOW01000039
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
27992
27920
-
Phe
GAA
[ENA]
¡û
>W1710793052
LJOX01000005
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
3926
3854
-
Phe
GAA
[ENA]
¡û
>W1710793125
LJOY01000057
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
23835
23907
+
Phe
GAA
[ENA]
¡û
>W1710882457
LMTZ01000066
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
136948
136876
-
Phe
GAA
[ENA]
¡û
>W1710882460
LMTZ01000083
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
29128
29200
+
Phe
GAA
[ENA]
¡û
>W1711092434
LTEC01000008
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
65309
65381
+
Phe
GAA
[ENA]
¡û
>W1711229749
LXYR01000066
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
18623
18549
-
Phe
GAA
[ENA]
¡û
>W1711335749
MBRD01000004
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
522075
522003
-
Phe
GAA
[ENA]
¡û
>W1711629789
MPPI01000020
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
78575
78647
+
Phe
GAA
[ENA]
¡û
>W1711666638
MRCD01000047
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
19492
19564
+
Phe
GAA
[ENA]
¡û
>C171000042
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
6077162
6077090
-
Phe
GAA
-
¡û
>C171000105
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
6077163
6077091
-
Phe
GAA
-
¡û
>W131036223
ALVJ01000012
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
139571
139499
-
Phe
GAA
[ENA]
¡û
>W131036299
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
6221773
6221845
+
Phe
GAA
[ENA]
¡û
>W131058339
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4415766
4415694
-
Phe
GAA
[ENA]
¡û
>W131110087
APIY01000049
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
1414
1342
-
Phe
GAA
[ENA]
¡û
>W131110154
APIZ01000271
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
11636
11564
-
Phe
GAA
[ENA]
¡û
>C001220
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
5557885
5557813
-
Phe
GAA
[Ensembl]
¡û
>C015307
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
955607
955535
-
Phe
GAA
[Ensembl]
¡û
>W141022899
AJWF01000008
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
58895
58820
-
Phe
GAA
[ENA]
¡û
>W141038261
ALVK01000018
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
1630949
1630877
-
Phe
GAA
[ENA]
¡û
>W141150874
AXAQ01000448
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
5471
5399
-
Phe
GAA
[ENA]
¡û
>WENV181841067
OGVQ01000090
[OGVQ] freshwater metagenome; freshwater
18593
18665
+
Phe
GAA
[ENA]
¢þ
>W141242743
CAIS01000042
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
3470
3544
+
Phe
GAA
[ENA]
¡û
>W141242870
CAIY01000035
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
5351
5277
-
Phe
GAA
[ENA]
¡û
>W141260277
CBZS010000726
Cyanobacteriota
Richelia intracellularis [CBZS]
15611
15686
+
Phe
GAA
[ENA]
¡û
>WENV170019398
BBPD01010387
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
92
20
-
Phe
GAA
[ENA]
¢þ
>WENV170984104
MWVV01168516
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
345
419
+
Phe
GAA
[ENA]
¢þ
>C181004811
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
777895
777967
+
Phe
GAA
-
¡û
>C181004873
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
243657
243729
+
Phe
GAA
-
¡û
>C181004912
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
658991
659063
+
Phe
GAA
-
¡û
>C181004968
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
609191
609263
+
Phe
GAA
-
¡û
>C191001292
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
1645585
1645513
-
Phe
GAA
-
¡û
>W09101141
AAEA01000001
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
299587
299514
-
Phe
GAA
[ENA]
¡û
>W141805275
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
2301233
2301157
-
Phe
GAA
[ENA]
¡û
>W1910008374
BDGE01000012
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
48018
47946
-
Phe
GAA
[ENA]
¡û
>W1910018065
BDQK01000013
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
688163
688235
+
Phe
GAA
[ENA]
¡û
>W1910018091
BDQL01000003
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
11528
11456
-
Phe
GAA
[ENA]
¡û
>W1910175567
BJCF01000066
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
12715
12787
+
Phe
GAA
[ENA]
¡û
>W1910502532
FYBH01000271
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
245
322
+
Phe
GAA
[ENA]
¡û
>W1911278545
NTFS01000291
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
5320
5392
+
Phe
GAA
[ENA]
¡û
>W1911581781
PGEM01000076
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
12430
12502
+
Phe
GAA
[ENA]
¡û
>W1911638297
PVWJ01000042
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
30978
31050
+
Phe
GAA
[ENA]
¡û
>W1810366261
PVWG01000024
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
62820
62892
+
Phe
GAA
[ENA]
¡û
>C151004157
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
780435
780509
+
Phe
GAA
[Ensembl]
¡û
>C151081806
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
2299441
2299365
-
Phe
GAA
[Ensembl]
¡û
>C151082960
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
5476913
5476985
+
Phe
GAA
-
¡û
>W1511108012
JJML01000030
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
12988
12916
-
Phe
GAA
[ENA]
¡û
>C161002687
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
4859431
4859359
-
Phe
GAA
[Ensembl]
¡û
>C161038912
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
6920427
6920499
+
Phe
GAA
[Ensembl]
¡û
>W1610057097
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2565649
2565721
+
Phe
GAA
[ENA]
¡û
>C131004246
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
2281115
2281041
-
Phe
GAA
[Ensembl]
¡û
>C131004143
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
1823785
1823857
+
Phe
GAA
[Ensembl]
¡û
>C131004689
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
517570
517498
-
Phe
GAA
[Ensembl]
¡û
>C131004702
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
2604577
2604649
+
Phe
GAA
[Ensembl]
¡û
>C131005090
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
1655553
1655481
-
Phe
GAA
[Ensembl]
¡û
>W1610656793
LJOR01000028
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
86075
86148
+
Phe
GAA
[ENA]
¡û
>W1610656854
LJOS01000074
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
10307
10235
-
Phe
GAA
[ENA]
¡û
>W1610656884
LJOT01000151
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
8234
8306
+
Phe
GAA
[ENA]
¡û
>W1610656950
LJOV01000032
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
10840
10766
-
Phe
GAA
[ENA]
¡û
>W1610657006
LJOW01000039
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
27992
27920
-
Phe
GAA
[ENA]
¡û
>W1610657056
LJOX01000005
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
3926
3854
-
Phe
GAA
[ENA]
¡û
>W1610657129
LJOY01000057
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
23835
23907
+
Phe
GAA
[ENA]
¡û
>W1610744383
LMTZ01000066
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
136948
136876
-
Phe
GAA
[ENA]
¡û
>W1610744386
LMTZ01000083
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
29128
29200
+
Phe
GAA
[ENA]
¡û
>W1610926472
LTEC01000008
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
65309
65381
+
Phe
GAA
[ENA]
¡û
>W1611013619
LXYR01000066
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
18623
18549
-
Phe
GAA
[ENA]
¡û
>W1611066456
MBRD01000004
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
522075
522003
-
Phe
GAA
[ENA]
¡û
>W1710053796
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2565649
2565721
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK