This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463741 (111 seq.)
>W1710990915
LPXH01000018
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
78606
78531
-
Asn
GTT
[ENA]
¡û
>W1711628346
MPOE01000004
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
42760
42835
+
Asn
GTT
[ENA]
¡û
>W1711628347
MPOE01000004
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
42882
42957
+
Asn
GTT
[ENA]
¡û
>W1711628348
MPOE01000004
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
43005
43080
+
Asn
GTT
[ENA]
¡û
>W1711628349
MPOE01000004
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
43127
43202
+
Asn
GTT
[ENA]
¡û
>W1711628427
MPOF01000008
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
79271
79196
-
Asn
GTT
[ENA]
¡û
>W1711628428
MPOF01000008
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
79149
79074
-
Asn
GTT
[ENA]
¡û
>W1711628429
MPOF01000008
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
79026
78951
-
Asn
GTT
[ENA]
¡û
>W1711628430
MPOF01000008
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
78904
78829
-
Asn
GTT
[ENA]
¡û
>W1711628431
MPOF01000008
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
78782
78707
-
Asn
GTT
[ENA]
¡û
>W1711628432
MPOF01000008
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
78660
78585
-
Asn
GTT
[ENA]
¡û
>W1711628433
MPOF01000008
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
78538
78463
-
Asn
GTT
[ENA]
¡û
>C171067206
CP017758
Betaproteobacteria
Cupriavidus necator NH9 [CP017757, CP017758]
243393
243318
-
Asn
GTT
-
¡û
>C171104821
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
115480
115555
+
Asn
GTT
-
¡û
>C171104822
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
115602
115677
+
Asn
GTT
-
¡û
>C171104823
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
115725
115800
+
Asn
GTT
-
¡û
>C171104824
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
115847
115922
+
Asn
GTT
-
¡û
>C171119333
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
1063443
1063518
+
Asn
GTT
-
¡û
>W131158980
AQUR01000091
Betaproteobacteria
Cupriavidus neocaledonicus STM 6070 [AQUR]
39181
39106
-
Asn
GTT
[ENA]
¡û
>W131161566
AQXU01000022
Betaproteobacteria
Leeia oryzae DSM 17879 [AQXU]
156839
156764
-
Asn
GTT
[ENA]
¡û
>W131180943
ARNN01000032
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
59171
59096
-
Asn
GTT
[ENA]
¡û
>W131180944
ARNN01000032
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
58814
58739
-
Asn
GTT
[ENA]
¡û
>W131180951
ARNN01000035
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
47949
48024
+
Asn
GTT
[ENA]
¡û
>WENV180103168
OAPA01004475
[OAPA] marine metagenome; ENVO:00002010
225
300
+
Asn
GTT
[ENA]
¢þ
>WENV180114291
OAPS01003278
[OAPS] marine metagenome; sea water
1670
1745
+
Asn
GTT
[ENA]
¢þ
>WENV180292007
OBIV01264497
[OBIV] soil metagenome; Clay
127
202
+
Asn
GTT
[ENA]
¢þ
>W141237769
BBJR01000029
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
740
815
+
Asn
GTT
[ENA]
¡û
>W141319031
JBOK01000007
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
34
109
+
Asn
GTT
[ENA]
¡û
>W141319060
JBOK01000020
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
201
126
-
Asn
GTT
[ENA]
¡û
>W141319061
JBOK01000020
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
75
1
-
Asn
GTT
[ENA]
¡û
>W141319097
JBOK01000075
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
195
120
-
Asn
GTT
[ENA]
¡û
>W141319098
JBOK01000075
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
76
1
-
Asn
GTT
[ENA]
¡û
>W141319101
JBOK01000083
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
109
34
-
Asn
GTT
[ENA]
¡û
>WENV183743410
PJUJ01000941
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
2855
2930
+
Asn
GTT
[ENA]
¢þ
>WENV183743412
PJUJ01000941
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3091
3166
+
Asn
GTT
[ENA]
¢þ
>WENV183744167
PJUK01001122
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
601
676
+
Asn
GTT
[ENA]
¢þ
>WENV183744169
PJUK01001122
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
837
912
+
Asn
GTT
[ENA]
¢þ
>WENV183745079
PJUL01002035
[PJUL] feces metagenome; Chicken feces enriched on filter paper
568
643
+
Asn
GTT
[ENA]
¢þ
>WENV183745081
PJUL01002035
[PJUL] feces metagenome; Chicken feces enriched on filter paper
804
879
+
Asn
GTT
[ENA]
¢þ
>C181038268
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
49342
49417
+
Asn
GTT
-
¡û
>C181038339
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
685177
685102
-
Asn
GTT
-
¡û
>C181038340
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
684821
684746
-
Asn
GTT
-
¡û
>C181081275
CP023429
Betaproteobacteria
Neisseria weixii 10022 [CP023429]
2168602
2168527
-
Asn
GTT
-
¡û
>C181158421
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
2716316
2716391
+
Asn
GTT
-
¡û
>C191214491
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
813075
813000
-
Asn
GTT
-
¡û
>W141818166
JQLI01000001
Betaproteobacteria
Cupriavidus necator A5-1 [JQLI]
2724898
2724973
+
Asn
GTT
[ENA]
¡û
>C141006507
CP006668
Betaproteobacteria
Ralstonia pickettii DTP0602 [CP006667, CP006668, CP006669]
1485383
1485458
+
Asn
GTT
[Ensembl]
¡û
>W1911518149
OFSN01000010
Betaproteobacteria
Cupriavidus taiwanensis [OFSN]
40290
40215
-
Asn
GTT
[ENA]
¡û
>W1911518161
OFSO01000003
Betaproteobacteria
Cupriavidus taiwanensis [OFSO]
76929
76854
-
Asn
GTT
[ENA]
¡û
>W1911518225
OFSP01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFSP]
39237
39162
-
Asn
GTT
[ENA]
¡û
>W1911518278
OFSQ01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFSQ]
91661
91586
-
Asn
GTT
[ENA]
¡û
>W1911518325
OFSR01000005
Betaproteobacteria
Cupriavidus taiwanensis [OFSR]
76929
76854
-
Asn
GTT
[ENA]
¡û
>W1911518505
OFSU01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFSU]
36729
36654
-
Asn
GTT
[ENA]
¡û
>W1911518753
OFSZ01000017
Betaproteobacteria
Cupriavidus taiwanensis [OFSZ]
85607
85532
-
Asn
GTT
[ENA]
¡û
>W1911518776
OFTA01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
85607
85532
-
Asn
GTT
[ENA]
¡û
>W1911518826
OFTB01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTB]
38166
38091
-
Asn
GTT
[ENA]
¡û
>W1911518880
OFTC01000008
Betaproteobacteria
Cupriavidus neocaledonicus taiwanensis [OFTC]
38200
38125
-
Asn
GTT
[ENA]
¡û
>W1911518942
OFTD01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFTD]
86060
85985
-
Asn
GTT
[ENA]
¡û
>W1911518990
OFTE01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTE]
36950
36875
-
Asn
GTT
[ENA]
¡û
>W1911519075
OFTF01000014
Betaproteobacteria
Cupriavidus taiwanensis [OFTF]
26762
26687
-
Asn
GTT
[ENA]
¡û
>W1911519129
OFTG01000017
Betaproteobacteria
Cupriavidus taiwanensis [OFTG]
26762
26687
-
Asn
GTT
[ENA]
¡û
>W1911519182
OFTH01000015
Betaproteobacteria
Cupriavidus taiwanensis [OFTH]
26762
26687
-
Asn
GTT
[ENA]
¡û
>W1911519212
OFTI01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTI]
77003
76928
-
Asn
GTT
[ENA]
¡û
>W1911519267
OFTJ01000006
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
76927
76852
-
Asn
GTT
[ENA]
¡û
>W1911519329
OFTK01000006
Betaproteobacteria
Cupriavidus taiwanensis [OFTK]
76983
76908
-
Asn
GTT
[ENA]
¡û
>W1911519377
OFTL01000005
Betaproteobacteria
Cupriavidus taiwanensis [OFTL]
38204
38129
-
Asn
GTT
[ENA]
¡û
>W1911519454
OFTM01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTM]
26762
26687
-
Asn
GTT
[ENA]
¡û
>W1911519492
OFTN01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTN]
76925
76850
-
Asn
GTT
[ENA]
¡û
>W1911519582
OFTO01000013
Betaproteobacteria
Cupriavidus taiwanensis [OFTO]
73604
73529
-
Asn
GTT
[ENA]
¡û
>W1911519652
OFTQ01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTQ]
38166
38091
-
Asn
GTT
[ENA]
¡û
>W1911519759
OFTS01000005
Betaproteobacteria
Cupriavidus taiwanensis [OFTS]
36755
36680
-
Asn
GTT
[ENA]
¡û
>W1911551376
OVTA01000008
Betaproteobacteria
Cupriavidus taiwanensis [OVTA]
10141
10066
-
Asn
GTT
[ENA]
¡û
>W1911573284
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
3658042
3658117
+
Asn
GTT
[ENA]
¡û
>W1911573286
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
3658278
3658353
+
Asn
GTT
[ENA]
¡û
>W1911622522
PQSP01000116
Betaproteobacteria
Saezia sanguinis CNM695-12 [PQSP]
179
254
+
Asn
GTT
[ENA]
¡û
>W1810052195
PDBT02000027
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
11563
11488
-
Asn
GTT
[ENA]
¡û
>W1810120661
PHTC01000093
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
1545
1470
-
Asn
GTT
[ENA]
¡û
>W1810227225
POXE01000012
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
28684
28609
-
Asn
GTT
[ENA]
¡û
>W1810227240
POXF01000001
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
479517
479442
-
Asn
GTT
[ENA]
¡û
>W1810227436
POXI01000007
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
28646
28571
-
Asn
GTT
[ENA]
¡û
>W1810228014
POXU01000001
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
50495
50570
+
Asn
GTT
[ENA]
¡û
>W1810390532
PXYY01000006
Betaproteobacteria
Neisseria iguanae ATCC 51483 [PXYY]
15118
15193
+
Asn
GTT
[ENA]
¡û
>W1810573236
QEKP01000002
Betaproteobacteria
Cupriavidus alkaliphilus CAG-122 [QEKP]
40691
40616
-
Asn
GTT
[ENA]
¡û
>W1810685750
QKZN01000002
Betaproteobacteria
Cupriavidus alkaliphilus MLR2-44 [QKZN]
604365
604440
+
Asn
GTT
[ENA]
¡û
>W1810696445
QLTI01000002
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
542481
542556
+
Asn
GTT
[ENA]
¡û
>W1511516959
JXWN01000080
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
8497
8422
-
Asn
GTT
[ENA]
¡û
>W1511516960
JXWN01000080
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
8371
8296
-
Asn
GTT
[ENA]
¡û
>W1511516961
JXWN01000080
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
8245
8170
-
Asn
GTT
[ENA]
¡û
>W1511516962
JXWN01000080
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
8119
8044
-
Asn
GTT
[ENA]
¡û
>W1511516963
JXWN01000080
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
8002
7927
-
Asn
GTT
[ENA]
¡û
>W11175901
AFWQ01000003
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
50537
50612
+
Asn
GTT
[ENA]
¡û
>W11175964
AFWR01000029
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
15235
15160
-
Asn
GTT
[ENA]
¡û
>C161002875
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1821277
1821202
-
Asn
GTT
-
¡û
>C161002876
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1821151
1821076
-
Asn
GTT
-
¡û
>C161002877
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1821025
1820950
-
Asn
GTT
-
¡û
>C161002878
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1820899
1820824
-
Asn
GTT
-
¡û
>C161002879
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1820782
1820707
-
Asn
GTT
-
¡û
>C161078303
CP014844
Betaproteobacteria
Cupriavidus nantongensis X1 [CP014844, CP014845]
2966008
2965933
-
Asn
GTT
[Ensembl]
¡û
>C161109154
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
1525147
1525072
-
Asn
GTT
[Ensembl]
¡û
>WENV061969
AACY023445243
Marine microbial communities from Global Ocean Sampling (GOS)
1116
1193
+
Asn
GTT
[ENA]
>W1610062610
BCNR01000002
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
27165
27240
+
Asn
GTT
[ENA]
¡û
>W1610062612
BCNR01000002
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
27401
27476
+
Asn
GTT
[ENA]
¡û
>W1610120982
CZPV01000005
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
250309
250234
-
Asn
GTT
[ENA]
¡û
>W1610121029
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
536606
536681
+
Asn
GTT
[ENA]
¡û
>W1610514381
FMAD01000003
Betaproteobacteria
Cupriavidus alkaliphilus [FMAD]
40598
40523
-
Asn
GTT
[ENA]
¡û
>W1610845587
LPXH01000018
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
78606
78531
-
Asn
GTT
[ENA]
¡û
>W1710060086
BCNR01000002
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
27165
27240
+
Asn
GTT
[ENA]
¡û
>W1710060088
BCNR01000002
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
27401
27476
+
Asn
GTT
[ENA]
¡û
>W1710123686
CZPV01000005
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
250309
250234
-
Asn
GTT
[ENA]
¡û
>W1710123733
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
536606
536681
+
Asn
GTT
[ENA]
¡û
>W1710500071
FMAD01000003
Betaproteobacteria
Cupriavidus alkaliphilus [FMAD]
40598
40523
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK