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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463743 (54 seq.)
>W1710806386
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
2891910
2891985
+
Asn
GTT
[ENA]
¡û
>W1710813419
LKJO01000119
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
62533
62608
+
Asn
GTT
[ENA]
¡û
>W1710815741
LKKN01000060
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
233082
233007
-
Asn
GTT
[ENA]
¡û
>W1711089371
LSZO01000175
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
14309
14384
+
Asn
GTT
[ENA]
¡û
>W1711101683
LTNB01000030
Gammaproteobacteria
Pseudomonas sp. HMSC75E02 [LTNB]
52996
52921
-
Asn
GTT
[ENA]
¡û
>W1711292861
LZYC01000042
Gammaproteobacteria
Pseudomonas sp. EGD-AKN5 [LZYC]
25986
25911
-
Asn
GTT
[ENA]
¡û
>W1711421613
MHZH01000003
Gammaproteobacteria
Pseudomonadales bacterium GWC1_66_9 [MHZH]
22021
22096
+
Asn
GTT
[ENA]
¡û
>W131061427
ANIR01000003
Gammaproteobacteria
Pseudomonas sp. M1 [ANIR]
1506717
1506792
+
Asn
GTT
[ENA]
¡û
>W131155973
AQPA01000056
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
45361
45286
-
Asn
GTT
[ENA]
¡û
>W131180912
ARNM01000049
Gammaproteobacteria
Solimonas variicoloris DSM 15731 [ARNM]
171079
171154
+
Asn
GTT
[ENA]
¡û
>W131225700
AUDU01000035
Gammaproteobacteria
Stutzerimonas azotifigens DSM 17556 [AUDU]
10667
10742
+
Asn
GTT
[ENA]
¡û
>W131228325
AUFV01000010
Gammaproteobacteria
Solimonas flava DSM 18980 [AUFV]
120234
120309
+
Asn
GTT
[ENA]
¡û
>w002079
AAAU03000008
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
82085
82162
+
Asn
GTT
[ENA]
¡û
>W141216322
AZUT01000018
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
7789
7714
-
Asn
GTT
[ENA]
¡û
>WENV170004394
AGTN01666684
[AGTN] bioreactor metagenome; poplar biomass
54
129
+
Asn
GTT
[ENA]
¢þ
>C181011082
CP011835
Gammaproteobacteria
Azotobacter chroococcum B3 [CP011835]
1658086
1658161
+
Asn
GTT
-
¡û
>W141727388
JNCW01000037
Gammaproteobacteria
Pseudomonas sp. AAC [JNCW]
231
156
-
Asn
GTT
[ENA]
¡û
>W09102117
AAHH01000008
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
82086
82161
+
Asn
GTT
[ENA]
¡û
>C09100882
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
1995971
1996046
+
Asn
GTT
[Ensembl]
¡û
>W1910549206
FZPC01000005
Gammaproteobacteria
Pseudomonas delhiensis RLD-1 [FZPC]
13188
13263
+
Asn
GTT
[ENA]
¡û
>W1910810347
MUJY01000041
Gammaproteobacteria
Pseudomonas sp. PIC25 [MUJY]
33754
33679
-
Asn
GTT
[ENA]
¡û
>W1910810799
MUNN01000148
Gammaproteobacteria
Pseudomonas indica PIC105 [MUNN]
8619
8694
+
Asn
GTT
[ENA]
¡û
>W1911586059
PISI01000035
Gammaproteobacteria
Pseudomonas citronellolis DSM 50332 [PISI]
365443
365368
-
Asn
GTT
[ENA]
¡û
>W1810017247
BGPP01000001
Gammaproteobacteria
Pseudomonas citronellolis LA18T [BGPP]
593908
593833
-
Asn
GTT
[ENA]
¡û
>W1810607804
QGSL01000091
Gammaproteobacteria
Pseudomonas sp. RW407 [QGSL]
374393
374318
-
Asn
GTT
[ENA]
¡û
>W1810670635
QJRX01000002
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
43887
43962
+
Asn
GTT
[ENA]
¡û
>C151068454
CP010415
Gammaproteobacteria
Azotobacter chroococcum NCIMB 8003 [CP010415]
2789509
2789434
-
Asn
GTT
[Ensembl]
¡û
>W1511483900
JWMC01000087
Gammaproteobacteria
Pseudomonas sp. PI1 [JWMC]
33369
33444
+
Asn
GTT
[ENA]
¡û
>C161067324
CP014158
Gammaproteobacteria
Pseudomonas citronellolis P3B5 [CP014158]
1128683
1128758
+
Asn
GTT
[Ensembl]
¡û
>C161092004
CP015878
Gammaproteobacteria
Pseudomonas citronellolis SJTE-3 [CP015878]
1132211
1132286
+
Asn
GTT
[Ensembl]
¡û
>W1610070276
BCTD01000008
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
18077
18002
-
Asn
GTT
[ENA]
¡û
>C131014891
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
1995996
1996071
+
Asn
GTT
[Ensembl]
¡û
>C131014955
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
1995984
1996059
+
Asn
GTT
[Ensembl]
¡û
>W1610670113
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
2891910
2891985
+
Asn
GTT
[ENA]
¡û
>W1610677516
LKJO01000119
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
62533
62608
+
Asn
GTT
[ENA]
¡û
>W1610679838
LKKN01000060
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
233082
233007
-
Asn
GTT
[ENA]
¡û
>W1610923749
LSZO01000175
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
14309
14384
+
Asn
GTT
[ENA]
¡û
>W1611050077
LZYC01000042
Gammaproteobacteria
Pseudomonas sp. EGD-AKN5 [LZYC]
25986
25911
-
Asn
GTT
[ENA]
¡û
>W1710067649
BCTD01000008
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
18077
18002
-
Asn
GTT
[ENA]
¡û
>W1710075710
BCZY01000009
Gammaproteobacteria
Pseudomonas citronellolis NBRC 103043 [BCZY]
320713
320638
-
Asn
GTT
[ENA]
¡û
>W1710075967
BDAC01000030
Gammaproteobacteria
Pseudomonas indica NBRC 103045 [BDAC]
8500
8575
+
Asn
GTT
[ENA]
¡û
>W1710076020
BDAD01000018
Gammaproteobacteria
Pseudomonas jinjuensis NBRC 103047 [BDAD]
107295
107370
+
Asn
GTT
[ENA]
¡û
>W1710082319
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
1037328
1037253
-
Asn
GTT
[ENA]
¡û
>W1710518013
FNDS01000015
Gammaproteobacteria
Pseudomonas panipatensis [FNDS]
82141
82216
+
Asn
GTT
[ENA]
¡û
>W1710518581
FNEC01000068
Gammaproteobacteria
Pseudomonas delhiensis [FNEC]
12321
12246
-
Asn
GTT
[ENA]
¡û
>W1710519938
FNFD01000028
Gammaproteobacteria
Pseudomonas indica [FNFD]
8867
8942
+
Asn
GTT
[ENA]
¡û
>W1710523996
FNIJ01000016
Gammaproteobacteria
Pseudomonas jinjuensis [FNIJ]
36343
36268
-
Asn
GTT
[ENA]
¡û
>W1710541741
FNYO01000016
Gammaproteobacteria
Azotobacter beijerinckii [FNYO]
25058
24983
-
Asn
GTT
[ENA]
¡û
>W1710541835
FNYQ01000014
Gammaproteobacteria
Azotobacter beijerinckii [FNYQ]
5622
5547
-
Asn
GTT
[ENA]
¡û
>W1710550538
FOFJ01000019
Gammaproteobacteria
Azotobacter beijerinckii [FOFJ]
26195
26120
-
Asn
GTT
[ENA]
¡û
>W1710556669
FOKJ01000060
Gammaproteobacteria
Azotobacter beijerinckii [FOKJ]
5200
5275
+
Asn
GTT
[ENA]
¡û
>W1710558280
FOLS01000003
Gammaproteobacteria
Pseudomonas citronellolis [FOLS]
117236
117311
+
Asn
GTT
[ENA]
¡û
>W1710567664
FOSX01000116
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
5010
5085
+
Asn
GTT
[ENA]
¡û
>W1710581970
FPKM01000012
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
81744
81819
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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