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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463802 (145 seq.)
>W1710926029
LODR01000003
Bacillota
Megasphaera sp. DJF_B143 [LODR]
29071
29146
+
Ala
GGC
[ENA]
¡û
>W1711055669
LRVC01000049
Bacillota
Megasphaera sp. MJR8396C [LRVC]
46214
46139
-
Ala
GGC
[ENA]
¡û
>W131109524
APHX01000032
Bacillota
Megasphaera sp. BL7 [APHX]
3969
4044
+
Ala
GGC
[ENA]
¡û
>W131109588
APHY01000030
Bacillota
Megasphaera sp. NM10 [APHY]
3537
3612
+
Ala
GGC
[ENA]
¡û
>W1711120522
LUGJ01000009
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
4599
4524
-
Ala
GGC
[ENA]
¡û
>W131251587
CAVO010000022
Bacillota
Megasphaera massiliensis NP3 [CAVO]
31626
31551
-
Ala
GGC
[ENA]
¡û
>WENV180118794
OASD01000947
[OASD] human gut metagenome; ENVO:feces
1141
1216
+
Ala
GGC
[ENA]
¢þ
>WENV180185108
OAWS01028445
[OAWS] human gut metagenome; faeces
472
397
-
Ala
GGC
[ENA]
¢þ
>WENV180235218
OBCT01008011
[OBCT] human gut metagenome; human gut
81
6
-
Ala
GGC
[ENA]
¢þ
>WENV180235907
OBCU01006601
[OBCU] human gut metagenome; human gut
112
37
-
Ala
GGC
[ENA]
¢þ
>WENV180289734
OBIU01000089
[OBIU] human gut metagenome; human gut
4384
4309
-
Ala
GGC
[ENA]
¢þ
>WENV180305483
OBJO01000221
[OBJO] human gut metagenome; human gut
20350
20275
-
Ala
GGC
[ENA]
¢þ
>WENV180339589
OBLI01005977
[OBLI] pig gut metagenome; faeces
3858
3933
+
Ala
GGC
[ENA]
¢þ
>WENV180574815
OCLX01005878
[OCLX] human gut metagenome; human gut
1355
1430
+
Ala
GGC
[ENA]
¢þ
>WENV180575723
OCLY01005390
[OCLY] human gut metagenome; human gut
209
134
-
Ala
GGC
[ENA]
¢þ
>WENV180578887
OCMC01004817
[OCMC] human gut metagenome; human gut
1559
1634
+
Ala
GGC
[ENA]
¢þ
>WENV180597282
OCPK01032030
[OCPK] human gut metagenome; ENVO:feces
190
265
+
Ala
GGC
[ENA]
¢þ
>WENV180674391
OCVV011351017
[OCVV] gut metagenome; gut
30118
30043
-
Ala
GGC
[ENA]
¢þ
>WENV180674396
OCVV011351017
[OCVV] gut metagenome; gut
30118
30043
-
Ala
GGC
[ENA]
¢þ
>WENV180742713
ODHH01016960
[ODHH] human metagenome; G_DNA_Stool
1164
1239
+
Ala
GGC
[ENA]
¢þ
>WENV180841241
ODKJ01083118
[ODKJ] human metagenome; G_DNA_Stool
61
136
+
Ala
GGC
[ENA]
¢þ
>WENV180995633
ODVR01006833
[ODVR] human metagenome; G_DNA_Stool
2611
2686
+
Ala
GGC
[ENA]
¢þ
>WENV181336774
OFME01000026
[OFME] human gut metagenome; human gut
97909
97984
+
Ala
GGC
[ENA]
¢þ
>WENV181340416
OFMH01000101
[OFMH] human gut metagenome; human gut
13541
13616
+
Ala
GGC
[ENA]
¢þ
>WENV181354855
OFMT01000068
[OFMT] human gut metagenome; human gut
54123
54198
+
Ala
GGC
[ENA]
¢þ
>WENV181394945
OFRZ01001939
[OFRZ] human gut metagenome; human gut
6123
6198
+
Ala
GGC
[ENA]
¢þ
>WENV181396167
OFSC01000456
[OFSC] human gut metagenome; human gut
13154
13079
-
Ala
GGC
[ENA]
¢þ
>WENV181434081
OGDF01000269
[OGDF] human gut metagenome; human gut
16272
16347
+
Ala
GGC
[ENA]
¢þ
>WENV181463498
OGEO01004538
[OGEO] metagenome; Human gut stool
421
496
+
Ala
GGC
[ENA]
¢þ
>WENV181464246
OGEP01000396
[OGEP] metagenome; Human gut stool
40910
40985
+
Ala
GGC
[ENA]
¢þ
>WENV181467703
OGER01027519
[OGER] metagenome; Human gut stool
845
770
-
Ala
GGC
[ENA]
¢þ
>WENV181476171
OGFE01011896
[OGFE] metagenome; Human gut stool
2055
1980
-
Ala
GGC
[ENA]
¢þ
>WENV181506378
OGGM01001325
[OGGM] metagenome; Human gut stool
5773
5698
-
Ala
GGC
[ENA]
¢þ
>WENV181555350
OGIT01001418
[OGIT] metagenome; Human gut stool
3829
3904
+
Ala
GGC
[ENA]
¢þ
>WENV181609628
OGLN01091715
[OGLN] metagenome; Human gut stool
505
430
-
Ala
GGC
[ENA]
¢þ
>WENV181775197
OGRF01001177
[OGRF] human gut metagenome; faeces
1265
1190
-
Ala
GGC
[ENA]
¢þ
>WENV181822554
OGUG01010142
[OGUG] metagenome; Human gut stool
1321
1246
-
Ala
GGC
[ENA]
¢þ
>WENV181871295
OGWZ01000065
[OGWZ] human gut metagenome; faeces
97908
97983
+
Ala
GGC
[ENA]
¢þ
>WENV181871447
OGWZ01000170
[OGWZ] human gut metagenome; faeces
13756
13681
-
Ala
GGC
[ENA]
¢þ
>WENV181885387
OGXJ01015733
[OGXJ] human gut metagenome; faeces
921
996
+
Ala
GGC
[ENA]
¢þ
>WENV181905591
OGXY01000718
[OGXY] human gut metagenome; faeces
452
527
+
Ala
GGC
[ENA]
¢þ
>WENV181910982
OGYD01000127
[OGYD] human gut metagenome; faeces
57267
57192
-
Ala
GGC
[ENA]
¢þ
>WENV181913390
OGYE01006891
[OGYE] human gut metagenome; faeces
4649
4574
-
Ala
GGC
[ENA]
¢þ
>WENV181923663
OGYL01001255
[OGYL] human gut metagenome; faeces
2836
2911
+
Ala
GGC
[ENA]
¢þ
>WENV181929673
OGYO01049333
[OGYO] human gut metagenome; faeces
342
417
+
Ala
GGC
[ENA]
¢þ
>WENV181931312
OGYQ01000198
[OGYQ] human gut metagenome; faeces
39228
39153
-
Ala
GGC
[ENA]
¢þ
>WENV181936722
OGYV01003697
[OGYV] human gut metagenome; faeces
3344
3419
+
Ala
GGC
[ENA]
¢þ
>WENV181939475
OGYX01001858
[OGYX] human gut metagenome; faeces
1260
1335
+
Ala
GGC
[ENA]
¢þ
>WENV181943777
OGYZ01041780
[OGYZ] human gut metagenome; faeces
793
718
-
Ala
GGC
[ENA]
¢þ
>WENV181944835
OGZB01000181
[OGZB] human gut metagenome; faeces
35054
34979
-
Ala
GGC
[ENA]
¢þ
>WENV181949599
OGZF01002951
[OGZF] human gut metagenome; faeces
6084
6159
+
Ala
GGC
[ENA]
¢þ
>WENV181953195
OGZI01003551
[OGZI] human gut metagenome; faeces
7499
7574
+
Ala
GGC
[ENA]
¢þ
>WENV181958754
OGZM01000424
[OGZM] human gut metagenome; faeces
51174
51099
-
Ala
GGC
[ENA]
¢þ
>WENV181961375
OGZO01007992
[OGZO] human gut metagenome; faeces
1328
1253
-
Ala
GGC
[ENA]
¢þ
>WENV181969723
OGZX01000356
[OGZX] human gut metagenome; faeces
2838
2913
+
Ala
GGC
[ENA]
¢þ
>WENV181974477
OHAB01039352
[OHAB] human gut metagenome; faeces
640
715
+
Ala
GGC
[ENA]
¢þ
>WENV181980800
OHAG01000039
[OHAG] human gut metagenome; faeces
85627
85702
+
Ala
GGC
[ENA]
¢þ
>WENV182000533
OHAY01000117
[OHAY] human gut metagenome; faeces
60873
60798
-
Ala
GGC
[ENA]
¢þ
>WENV182000709
OHAY01000353
[OHAY] human gut metagenome; faeces
12363
12288
-
Ala
GGC
[ENA]
¢þ
>WENV182009675
OHBJ01031841
[OHBJ] human gut metagenome; faeces
719
794
+
Ala
GGC
[ENA]
¢þ
>WENV182135529
OHKJ01000373
[OHKJ] human gut metagenome; feces
15948
15873
-
Ala
GGC
[ENA]
¢þ
>WENV182166176
OHMP01001227
[OHMP] human gut metagenome; feces
791
716
-
Ala
GGC
[ENA]
¢þ
>WENV182208012
OHPX01000214
[OHPX] human gut metagenome; feces
36856
36781
-
Ala
GGC
[ENA]
¢þ
>WENV182248726
OHSP01000457
[OHSP] human gut metagenome; feces
11868
11793
-
Ala
GGC
[ENA]
¢þ
>WENV182334369
OHZM01007993
[OHZM] human gut metagenome; feces
84
9
-
Ala
GGC
[ENA]
¢þ
>WENV182370610
OICT01001490
[OICT] human gut metagenome; feces
9076
9151
+
Ala
GGC
[ENA]
¢þ
>WENV182371440
OICU01002125
[OICU] human gut metagenome; feces
3350
3275
-
Ala
GGC
[ENA]
¢þ
>WENV182390184
OIED01034858
[OIED] human gut metagenome; feces
138
63
-
Ala
GGC
[ENA]
¢þ
>WENV182509953
OIWK01000344
[OIWK] human gut metagenome; faeces
32071
31996
-
Ala
GGC
[ENA]
¢þ
>WENV182516834
OIWO01000445
[OIWO] human gut metagenome; faeces
36113
36188
+
Ala
GGC
[ENA]
¢þ
>WENV182524419
OIWT01000188
[OIWT] human gut metagenome; faeces
84521
84446
-
Ala
GGC
[ENA]
¢þ
>WENV182525547
OIWT01002882
[OIWT] human gut metagenome; faeces
938
863
-
Ala
GGC
[ENA]
¢þ
>WENV182659745
OJML01034430
[OJML] human gut metagenome; feces
928
1003
+
Ala
GGC
[ENA]
¢þ
>WENV182767203
OJRV01000100
[OJRV] human gut metagenome; human gut
106822
106747
-
Ala
GGC
[ENA]
¢þ
>WENV182768913
OJRW01000054
[OJRW] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182770344
OJRX01000094
[OJRX] human gut metagenome; human gut
106822
106747
-
Ala
GGC
[ENA]
¢þ
>WENV182772113
OJRY01000208
[OJRY] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182773455
OJRZ01000690
[OJRZ] human gut metagenome; human gut
29868
29793
-
Ala
GGC
[ENA]
¢þ
>WENV182774720
OJSA01000859
[OJSA] human gut metagenome; human gut
2262
2337
+
Ala
GGC
[ENA]
¢þ
>WENV182776168
OJSB01002814
[OJSB] human gut metagenome; human gut
2262
2337
+
Ala
GGC
[ENA]
¢þ
>WENV182776801
OJSC01000098
[OJSC] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182778531
OJSD01000115
[OJSD] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182780417
OJSE01000118
[OJSE] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182782326
OJSF01000078
[OJSF] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182783396
OJSG01000084
[OJSG] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182784382
OJSH01000091
[OJSH] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182785567
OJSI01000094
[OJSI] human gut metagenome; human gut
106822
106747
-
Ala
GGC
[ENA]
¢þ
>WENV182786583
OJSJ01000078
[OJSJ] human gut metagenome; human gut
2266
2341
+
Ala
GGC
[ENA]
¢þ
>WENV182787380
OJSK01000086
[OJSK] human gut metagenome; human gut
2266
2341
+
Ala
GGC
[ENA]
¢þ
>WENV182789286
OJSL01010123
[OJSL] human gut metagenome; human gut
141
66
-
Ala
GGC
[ENA]
¢þ
>WENV182790330
OJSM01009109
[OJSM] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182791503
OJSN01006578
[OJSN] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182794448
OJSP01011917
[OJSP] human gut metagenome; human gut
2270
2345
+
Ala
GGC
[ENA]
¢þ
>WENV182795585
OJSQ01001163
[OJSQ] human gut metagenome; human gut
27485
27410
-
Ala
GGC
[ENA]
¢þ
>WENV182801159
OJUG01000308
[OJUG] human gut metagenome; human gut
76384
76309
-
Ala
GGC
[ENA]
¢þ
>WENV182868537
OKRS01009200
[OKRS] human gut metagenome; faeces
3135
3060
-
Ala
GGC
[ENA]
¢þ
>WENV182872061
OKRV01001683
[OKRV] human gut metagenome; faeces
2834
2909
+
Ala
GGC
[ENA]
¢þ
>WENV182875025
OKRX01000015
[OKRX] human gut metagenome; faeces
9879
9954
+
Ala
GGC
[ENA]
¢þ
>WENV182882443
OKSB01000502
[OKSB] human gut metagenome; faeces
34623
34548
-
Ala
GGC
[ENA]
¢þ
>WENV182883521
OKSB01013721
[OKSB] human gut metagenome; faeces
1512
1437
-
Ala
GGC
[ENA]
¢þ
>WENV182889968
OKSF01003701
[OKSF] human gut metagenome; faeces
2243
2318
+
Ala
GGC
[ENA]
¢þ
>WENV182917877
OKTV01008531
[OKTV] human gut metagenome; feces
177
102
-
Ala
GGC
[ENA]
¢þ
>WENV182924965
OKUI01004265
[OKUI] human gut metagenome; feces
246
171
-
Ala
GGC
[ENA]
¢þ
>WENV182932394
OKUU01003735
[OKUU] human gut metagenome; feces
259
184
-
Ala
GGC
[ENA]
¢þ
>WENV182941043
OKVG01000274
[OKVG] human gut metagenome; human gut
46616
46541
-
Ala
GGC
[ENA]
¢þ
>WENV182943521
OKVI01000155
[OKVI] human gut metagenome; human gut
46284
46209
-
Ala
GGC
[ENA]
¢þ
>WENV183023211
OLFS01000311
[OLFS] human gut metagenome; faeces
11528
11453
-
Ala
GGC
[ENA]
¢þ
>WENV183027774
OLFV01000388
[OLFV] human gut metagenome; faeces
32069
31994
-
Ala
GGC
[ENA]
¢þ
>WENV183029400
OLFW01000206
[OLFW] human gut metagenome; faeces
48167
48092
-
Ala
GGC
[ENA]
¢þ
>WENV183032819
OLFY01000670
[OLFY] human gut metagenome; faeces
9422
9497
+
Ala
GGC
[ENA]
¢þ
>WENV183071669
OLIS01027083
[OLIS] human gut metagenome; feces
14
89
+
Ala
GGC
[ENA]
¢þ
>WENV183080896
OLIY01025324
[OLIY] human gut metagenome; human gut
457
532
+
Ala
GGC
[ENA]
¢þ
>WENV183089706
OLJW01012736
[OLJW] human gut metagenome; human gut
1098
1023
-
Ala
GGC
[ENA]
¢þ
>WENV183091572
OLKG01001321
[OLKG] human gut metagenome; human gut
2262
2337
+
Ala
GGC
[ENA]
¢þ
>WENV183179643
OLPH01009119
[OLPH] human gut metagenome; faeces
775
850
+
Ala
GGC
[ENA]
¢þ
>WENV183207221
OLQA01008901
[OLQA] human gut metagenome; faeces
3413
3488
+
Ala
GGC
[ENA]
¢þ
>WENV183325354
OLVZ01000540
[OLVZ] human gut metagenome; faeces
2937
3012
+
Ala
GGC
[ENA]
¢þ
>WENV183332549
OLWD01001250
[OLWD] human gut metagenome; feces
8579
8504
-
Ala
GGC
[ENA]
¢þ
>WENV183465672
OMEB01000403
[OMEB] human gut metagenome; feces
4383
4308
-
Ala
GGC
[ENA]
¢þ
>WENV183485704
OMFQ01000715
[OMFQ] human gut metagenome; feces
4371
4296
-
Ala
GGC
[ENA]
¢þ
>WENV183551950
OOBJ01000303
[OOBJ] human gut metagenome; human gut
11591
11666
+
Ala
GGC
[ENA]
¢þ
>WENV183580784
OOCN01000458
[OOCN] human gut metagenome; human gut
33769
33844
+
Ala
GGC
[ENA]
¢þ
>WENV183599909
OODH01021407
[OODH] human gut metagenome; human gut
854
929
+
Ala
GGC
[ENA]
¢þ
>WENV183608661
OODQ01000047
[OODQ] human gut metagenome; human gut
517
442
-
Ala
GGC
[ENA]
¢þ
>WENV183637741
OQVH01001475
[OQVH] human gut metagenome; human gut
10288
10363
+
Ala
GGC
[ENA]
¢þ
>WENV183789175
PPYF01384773
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4503
4428
-
Ala
GGC
[ENA]
¢þ
>WENV170074696
CDZT01004947
[CDZT] gut metagenome; human stools
19722
19797
+
Ala
GGC
[ENA]
¢þ
>WENV170076800
CDZU01013530
[CDZU] gut metagenome; human stools
53845
53770
-
Ala
GGC
[ENA]
¢þ
>WENV170775583
LXOW01063545
[LXOW] bovine gut metagenome; Cow rumen
1117
1042
-
Ala
GGC
[ENA]
¢þ
>C181011496
CP011940
Bacillota
Megasphaera hexanoica MH [CP011940]
2559632
2559557
-
Ala
GGC
-
¡û
>C181156424
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
528860
528935
+
Ala
GGC
-
¡û
>C181156490
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
345680
345755
+
Ala
GGC
-
¡û
>W141559814
JHXC01000002
Bacillota
Megasphaera elsdenii T81 [JHXC]
70618
70693
+
Ala
GGC
[ENA]
¡û
>W1910212261
FMIV01000002
Bacillota
Caecibacter massiliensis Marseille-P2974 [FMIV]
878062
877987
-
Ala
GGC
[ENA]
¡û
>W1911179412
NQMW01000012
Bacillota
Megasphaera elsdenii indica [NQMW]
32667
32742
+
Ala
GGC
[ENA]
¡û
>W1810820854
QSFA01000003
Bacillota
Megasphaera sp. AM44-1BH [QSFA]
108247
108172
-
Ala
GGC
[ENA]
¡û
>W1511353866
JRPS01000007
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
16921
16996
+
Ala
GGC
[ENA]
¡û
>C161021123
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
147119
147194
+
Ala
GGC
-
¡û
>C161104333
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
80056
80131
+
Ala
GGC
[Ensembl]
¡û
>W1610783634
LODR01000003
Bacillota
Megasphaera sp. DJF_B143 [LODR]
29071
29146
+
Ala
GGC
[ENA]
¡û
>W1610896715
LRVC01000049
Bacillota
Megasphaera sp. MJR8396C [LRVC]
46214
46139
-
Ala
GGC
[ENA]
¡û
>W1610931719
LUGJ01000009
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
4599
4524
-
Ala
GGC
[ENA]
¡û
>WENV082407
BAAV01007638
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
1277
1200
-
Ala
GGC
[ENA]
>W1710564598
FOQP01000007
Bacillota
Megasphaera elsdenii [FOQP]
120012
119937
-
Ala
GGC
[ENA]
¡û
>W1710589755
FRAK01000004
Bacillota
Megasphaera elsdenii [FRAK]
125321
125246
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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