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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463803 (63 seq.)
>W1710926061
LODR01000028
Bacillota
Megasphaera sp. DJF_B143 [LODR]
134
209
+
Trp
CCA
[ENA]
¡û
>W1710926066
LODR01000031
Bacillota
Megasphaera sp. DJF_B143 [LODR]
129484
129409
-
Trp
CCA
[ENA]
¡û
>W1711055656
LRVC01000042
Bacillota
Megasphaera sp. MJR8396C [LRVC]
35
110
+
Trp
CCA
[ENA]
¡û
>W131109510
APHX01000019
Bacillota
Megasphaera sp. BL7 [APHX]
8858
8783
-
Trp
CCA
[ENA]
¡û
>W131109590
APHY01000033
Bacillota
Megasphaera sp. NM10 [APHY]
36350
36275
-
Trp
CCA
[ENA]
¡û
>W1711120529
LUGJ01000013
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
144
219
+
Trp
CCA
[ENA]
¡û
>WENV180184885
OAWS01003736
[OAWS] human gut metagenome; faeces
87
162
+
Trp
CCA
[ENA]
¢þ
>WENV180189094
OAWX01005950
[OAWX] human gut metagenome; faeces
1433
1358
-
Trp
CCA
[ENA]
¢þ
>WENV180290868
OBIU01141927
[OBIU] human gut metagenome; human gut
190
115
-
Trp
CCA
[ENA]
¢þ
>WENV180305693
OBJO01002224
[OBJO] human gut metagenome; human gut
5343
5268
-
Trp
CCA
[ENA]
¢þ
>WENV180339428
OBLI01004360
[OBLI] pig gut metagenome; faeces
61
136
+
Trp
CCA
[ENA]
¢þ
>WENV180578890
OCMC01004897
[OCMC] human gut metagenome; human gut
61
136
+
Trp
CCA
[ENA]
¢þ
>WENV180663617
OCVV011126648
[OCVV] gut metagenome; gut
97
172
+
Trp
CCA
[ENA]
¢þ
>WENV180663619
OCVV011126648
[OCVV] gut metagenome; gut
97
172
+
Trp
CCA
[ENA]
¢þ
>WENV180742472
ODHH01006638
[ODHH] human metagenome; G_DNA_Stool
3281
3356
+
Trp
CCA
[ENA]
¢þ
>WENV180841057
ODKJ01034319
[ODKJ] human metagenome; G_DNA_Stool
178
103
-
Trp
CCA
[ENA]
¢þ
>WENV181489645
OGFU01006670
[OGFU] metagenome; Human gut stool
224
149
-
Trp
CCA
[ENA]
¢þ
>WENV181859943
OGWQ01027012
[OGWQ] human gut metagenome; faeces
670
745
+
Trp
CCA
[ENA]
¢þ
>WENV181885286
OGXJ01010734
[OGXJ] human gut metagenome; faeces
2628
2553
-
Trp
CCA
[ENA]
¢þ
>WENV181936704
OGYV01003420
[OGYV] human gut metagenome; faeces
8999
8924
-
Trp
CCA
[ENA]
¢þ
>WENV181938757
OGYW01043659
[OGYW] human gut metagenome; faeces
239
164
-
Trp
CCA
[ENA]
¢þ
>WENV181959504
OGZM01022813
[OGZM] human gut metagenome; faeces
166
91
-
Trp
CCA
[ENA]
¢þ
>WENV181978726
OHAE01059527
[OHAE] human gut metagenome; faeces
61
136
+
Trp
CCA
[ENA]
¢þ
>WENV181980706
OHAG01000005
[OHAG] human gut metagenome; faeces
61
136
+
Trp
CCA
[ENA]
¢þ
>WENV182001447
OHAY01004997
[OHAY] human gut metagenome; faeces
7772
7697
-
Trp
CCA
[ENA]
¢þ
>WENV182104974
OHIB01027865
[OHIB] human gut metagenome; feces
385
460
+
Trp
CCA
[ENA]
¢þ
>WENV182188299
OHOM01001449
[OHOM] human gut metagenome; feces
3521
3596
+
Trp
CCA
[ENA]
¢þ
>WENV182291332
OHVZ01001188
[OHVZ] human gut metagenome; feces
35
110
+
Trp
CCA
[ENA]
¢þ
>WENV182371004
OICT01016554
[OICT] human gut metagenome; feces
61
136
+
Trp
CCA
[ENA]
¢þ
>WENV182757772
OJRH01031112
[OJRH] human gut metagenome; stool sample
678
603
-
Trp
CCA
[ENA]
¢þ
>WENV182776102
OJSB01002100
[OJSB] human gut metagenome; human gut
11478
11403
-
Trp
CCA
[ENA]
¢þ
>WENV182791782
OJSN01021510
[OJSN] human gut metagenome; human gut
1455
1380
-
Trp
CCA
[ENA]
¢þ
>WENV182883139
OKSB01004361
[OKSB] human gut metagenome; faeces
667
742
+
Trp
CCA
[ENA]
¢þ
>WENV182889970
OKSF01003732
[OKSF] human gut metagenome; faeces
8369
8294
-
Trp
CCA
[ENA]
¢þ
>WENV182941411
OKVG01001590
[OKVG] human gut metagenome; human gut
469
544
+
Trp
CCA
[ENA]
¢þ
>WENV183122443
OLNV01047320
[OLNV] human gut metagenome; faeces
506
581
+
Trp
CCA
[ENA]
¢þ
>WENV183207376
OLQA01013785
[OLQA] human gut metagenome; faeces
61
136
+
Trp
CCA
[ENA]
¢þ
>WENV183268820
OLRU01026108
[OLRU] human gut metagenome; faeces
1263
1188
-
Trp
CCA
[ENA]
¢þ
>WENV183527652
ONZW01001486
[ONZW] human gut metagenome; human gut
10097
10022
-
Trp
CCA
[ENA]
¢þ
>WENV183552279
OOBJ01002180
[OOBJ] human gut metagenome; human gut
125
200
+
Trp
CCA
[ENA]
¢þ
>WENV183608937
OODQ01000532
[OODQ] human gut metagenome; human gut
27372
27297
-
Trp
CCA
[ENA]
¢þ
>WENV183789654
PPYF01386362
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10046
9971
-
Trp
CCA
[ENA]
¢þ
>WENV170075795
CDZT01046187
[CDZT] gut metagenome; human stools
21155
21080
-
Trp
CCA
[ENA]
¢þ
>WENV170077437
CDZU01032393
[CDZU] gut metagenome; human stools
27897
27822
-
Trp
CCA
[ENA]
¢þ
>C181011498
CP011940
Bacillota
Megasphaera hexanoica MH [CP011940]
2405377
2405302
-
Trp
CCA
-
¡û
>C181011522
CP011940
Bacillota
Megasphaera hexanoica MH [CP011940]
165355
165280
-
Trp
CCA
-
¡û
>C181156483
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
308101
308026
-
Trp
CCA
-
¡û
>C181156550
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
260630
260555
-
Trp
CCA
-
¡û
>W141559872
JHXC01000023
Bacillota
Megasphaera elsdenii T81 [JHXC]
127
202
+
Trp
CCA
[ENA]
¡û
>W1910212279
FMIV01000003
Bacillota
Caecibacter massiliensis Marseille-P2974 [FMIV]
33079
33154
+
Trp
CCA
[ENA]
¡û
>W1910212283
FMIV01000003
Bacillota
Caecibacter massiliensis Marseille-P2974 [FMIV]
162244
162319
+
Trp
CCA
[ENA]
¡û
>W1911179418
NQMW01000014
Bacillota
Megasphaera elsdenii indica [NQMW]
8
83
+
Trp
CCA
[ENA]
¡û
>W1810820879
QSFA01000038
Bacillota
Megasphaera sp. AM44-1BH [QSFA]
9925
9850
-
Trp
CCA
[ENA]
¡û
>W1511353916
JRPS01000024
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
339030
338955
-
Trp
CCA
[ENA]
¡û
>C161021158
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
2433880
2433805
-
Trp
CCA
-
¡û
>C161104362
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
1397109
1397184
+
Trp
CCA
[Ensembl]
¡û
>W1610783666
LODR01000028
Bacillota
Megasphaera sp. DJF_B143 [LODR]
134
209
+
Trp
CCA
[ENA]
¡û
>W1610783671
LODR01000031
Bacillota
Megasphaera sp. DJF_B143 [LODR]
129484
129409
-
Trp
CCA
[ENA]
¡û
>W1610896702
LRVC01000042
Bacillota
Megasphaera sp. MJR8396C [LRVC]
35
110
+
Trp
CCA
[ENA]
¡û
>W1610931726
LUGJ01000013
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
144
219
+
Trp
CCA
[ENA]
¡û
>WENV083178
BAAX01005544
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
191
114
-
Trp
CCA
[ENA]
>W1710564619
FOQP01000023
Bacillota
Megasphaera elsdenii [FOQP]
502
577
+
Trp
CCA
[ENA]
¡û
>W1710589792
FRAK01000023
Bacillota
Megasphaera elsdenii [FRAK]
350
425
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK