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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463813 (71 seq.)
>W131114386
APPE01000041
Gammaproteobacteria
Acinetobacter variabilis NIPH 899 [APPE]
309895
309820
-
Lys
TTT
[ENA]
¡û
>W131114387
APPE01000041
Gammaproteobacteria
Acinetobacter variabilis NIPH 899 [APPE]
309762
309687
-
Lys
TTT
[ENA]
¡û
>W131114388
APPE01000041
Gammaproteobacteria
Acinetobacter variabilis NIPH 899 [APPE]
309629
309554
-
Lys
TTT
[ENA]
¡û
>W131117162
APQS01000019
Gammaproteobacteria
Acinetobacter lwoffii NCTC 5866 = CIP 64.10 [APQS]
477872
477797
-
Lys
TTT
[ENA]
¡û
>W131118392
APRJ01000013
Gammaproteobacteria
Acinetobacter pseudolwoffii NIPH 713 [APRJ]
102978
103053
+
Lys
TTT
[ENA]
¡û
>W131118393
APRJ01000013
Gammaproteobacteria
Acinetobacter pseudolwoffii NIPH 713 [APRJ]
103074
103149
+
Lys
TTT
[ENA]
¡û
>W131118963
APRS01000002
Gammaproteobacteria
Acinetobacter variabilis NIPH 2171 [APRS]
121016
121091
+
Lys
TTT
[ENA]
¡û
>W131118964
APRS01000002
Gammaproteobacteria
Acinetobacter variabilis NIPH 2171 [APRS]
121113
121188
+
Lys
TTT
[ENA]
¡û
>W131118965
APRS01000002
Gammaproteobacteria
Acinetobacter variabilis NIPH 2171 [APRS]
121246
121321
+
Lys
TTT
[ENA]
¡û
>W1711088917
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
226602
226677
+
Lys
TTT
[ENA]
¡û
>W1711088918
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
226695
226770
+
Lys
TTT
[ENA]
¡û
>W1711088919
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
226835
226910
+
Lys
TTT
[ENA]
¡û
>W1711089010
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
370858
370783
-
Lys
TTT
[ENA]
¡û
>W1711089011
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
370762
370687
-
Lys
TTT
[ENA]
¡û
>W1711089012
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
370622
370547
-
Lys
TTT
[ENA]
¡û
>W1711089084
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
97439
97364
-
Lys
TTT
[ENA]
¡û
>W1711089085
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
97343
97268
-
Lys
TTT
[ENA]
¡û
>W1711089086
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
97205
97130
-
Lys
TTT
[ENA]
¡û
>W1711089128
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
532859
532934
+
Lys
TTT
[ENA]
¡û
>W1711089129
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
532955
533030
+
Lys
TTT
[ENA]
¡û
>W1711089130
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
533093
533168
+
Lys
TTT
[ENA]
¡û
>W1712003453
NEGF01000002
Gammaproteobacteria
Acinetobacter terrae ANC 4655 [NEGF]
226684
226759
+
Lys
TTT
[ENA]
¡û
>W1712003454
NEGF01000002
Gammaproteobacteria
Acinetobacter terrae ANC 4655 [NEGF]
226777
226852
+
Lys
TTT
[ENA]
¡û
>W1712003455
NEGF01000002
Gammaproteobacteria
Acinetobacter terrae ANC 4655 [NEGF]
226917
226992
+
Lys
TTT
[ENA]
¡û
>W141439994
JEVW01000053
Gammaproteobacteria
Acinetobacter baumannii 348935 [JEVW]
8603
8678
+
Lys
TTT
[ENA]
¡û
>W141439995
JEVW01000053
Gammaproteobacteria
Acinetobacter baumannii 348935 [JEVW]
8700
8775
+
Lys
TTT
[ENA]
¡û
>W141439996
JEVW01000053
Gammaproteobacteria
Acinetobacter baumannii 348935 [JEVW]
8833
8908
+
Lys
TTT
[ENA]
¡û
>WENV170699533
LGVF01577056
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1334
1409
+
Lys
TTT
[ENA]
¢þ
>C181092849
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 [CP024011]
756481
756556
+
Lys
TTT
-
¡û
>C181092850
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 [CP024011]
756577
756652
+
Lys
TTT
-
¡û
>C181092851
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 [CP024011]
756710
756785
+
Lys
TTT
-
¡û
>C181133758
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
2606763
2606838
+
Lys
TTT
-
¡û
>C181133759
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
2606860
2606935
+
Lys
TTT
-
¡û
>C181133760
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
2606993
2607068
+
Lys
TTT
-
¡û
>W1810100869
PGOZ01000006
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5347 [PGOZ]
100868
100943
+
Lys
TTT
[ENA]
¡û
>W1810100870
PGOZ01000006
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5347 [PGOZ]
100964
101039
+
Lys
TTT
[ENA]
¡û
>W1810100871
PGOZ01000006
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5347 [PGOZ]
101098
101173
+
Lys
TTT
[ENA]
¡û
>W1810100952
PGPA01000003
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5324 [PGPA]
246728
246803
+
Lys
TTT
[ENA]
¡û
>W1810100953
PGPA01000003
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5324 [PGPA]
246824
246899
+
Lys
TTT
[ENA]
¡û
>W1810100954
PGPA01000003
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5324 [PGPA]
246958
247033
+
Lys
TTT
[ENA]
¡û
>W1810101065
PGPB01000016
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5318 [PGPB]
26676
26751
+
Lys
TTT
[ENA]
¡û
>W1810101066
PGPB01000016
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5318 [PGPB]
26772
26847
+
Lys
TTT
[ENA]
¡û
>W1810101067
PGPB01000016
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5318 [PGPB]
26906
26981
+
Lys
TTT
[ENA]
¡û
>W1810119056
PHRG01000001
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5044 [PHRG]
813902
813977
+
Lys
TTT
[ENA]
¡û
>W1810119057
PHRG01000001
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5044 [PHRG]
813998
814073
+
Lys
TTT
[ENA]
¡û
>W1810119058
PHRG01000001
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5044 [PHRG]
814132
814207
+
Lys
TTT
[ENA]
¡û
>W1511310796
JPQO01000200
Gammaproteobacteria
Acinetobacter sp. HR7 [JPQO]
36091
36016
-
Lys
TTT
[ENA]
¡û
>W1511478238
JWHB01000002
Gammaproteobacteria
Acinetobacter sp. YZS-X1-1 [JWHB]
30241
30166
-
Lys
TTT
[ENA]
¡û
>W1511478239
JWHB01000002
Gammaproteobacteria
Acinetobacter sp. YZS-X1-1 [JWHB]
30144
30069
-
Lys
TTT
[ENA]
¡û
>W1511478240
JWHB01000002
Gammaproteobacteria
Acinetobacter sp. YZS-X1-1 [JWHB]
30011
29936
-
Lys
TTT
[ENA]
¡û
>W1511500957
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
745437
745362
-
Lys
TTT
[ENA]
¡û
>W1511500958
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
745344
745269
-
Lys
TTT
[ENA]
¡û
>W1511500959
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
745204
745129
-
Lys
TTT
[ENA]
¡û
>W1610502553
FLLN01000011
Gammaproteobacteria
Acinetobacter pseudolwoffii lwoffii [FLLN]
795166
795091
-
Lys
TTT
[ENA]
¡û
>W1610502554
FLLN01000011
Gammaproteobacteria
Acinetobacter pseudolwoffii lwoffii [FLLN]
795070
794995
-
Lys
TTT
[ENA]
¡û
>W1610502555
FLLN01000011
Gammaproteobacteria
Acinetobacter pseudolwoffii lwoffii [FLLN]
794936
794861
-
Lys
TTT
[ENA]
¡û
>W1610923295
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
226602
226677
+
Lys
TTT
[ENA]
¡û
>W1610923296
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
226695
226770
+
Lys
TTT
[ENA]
¡û
>W1610923297
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
226835
226910
+
Lys
TTT
[ENA]
¡û
>W1610923388
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
370858
370783
-
Lys
TTT
[ENA]
¡û
>W1610923389
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
370762
370687
-
Lys
TTT
[ENA]
¡û
>W1610923390
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
370622
370547
-
Lys
TTT
[ENA]
¡û
>W1610923462
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
97439
97364
-
Lys
TTT
[ENA]
¡û
>W1610923463
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
97343
97268
-
Lys
TTT
[ENA]
¡û
>W1610923464
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
97205
97130
-
Lys
TTT
[ENA]
¡û
>W1610923506
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
532859
532934
+
Lys
TTT
[ENA]
¡û
>W1610923507
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
532955
533030
+
Lys
TTT
[ENA]
¡û
>W1610923508
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
533093
533168
+
Lys
TTT
[ENA]
¡û
>W1710495952
FLLN01000011
Gammaproteobacteria
Acinetobacter pseudolwoffii lwoffii [FLLN]
795166
795091
-
Lys
TTT
[ENA]
¡û
>W1710495953
FLLN01000011
Gammaproteobacteria
Acinetobacter pseudolwoffii lwoffii [FLLN]
795070
794995
-
Lys
TTT
[ENA]
¡û
>W1710495954
FLLN01000011
Gammaproteobacteria
Acinetobacter pseudolwoffii lwoffii [FLLN]
794936
794861
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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