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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464023 (28 seq.)
>W131158404
AQUA01000005
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
57206
57133
-
Glu
CTC
[ENA]
¡û
>W131237908
AUSE01000047
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
2438
2513
+
Glu
CTC
[ENA]
¡û
>WENV180113809
OAPR01028075
[OAPR] marine metagenome; seawater
304
377
+
Glu
CTC
[ENA]
¢þ
>WENV181367725
OFQC01004715
[OFQC] freshwater metagenome; Freshwater Lake
345
418
+
Glu
CTC
[ENA]
¢þ
>WENV181368910
OFQN01003284
[OFQN] freshwater metagenome; Freshwater Lake
1414
1487
+
Glu
CTC
[ENA]
¢þ
>WENV181370438
OFQS01012893
[OFQS] freshwater metagenome; Freshwater Lake
714
641
-
Glu
CTC
[ENA]
¢þ
>WENV181372269
OFQW01036601
[OFQW] wastewater metagenome; Exp Tend NO 90WW
592
517
-
Glu
CTC
[ENA]
¢þ
>WENV181395814
OFSB01005645
[OFSB] freshwater metagenome; Freshwater Lake
690
615
-
Glu
CTC
[ENA]
¢þ
>WENV181400653
OFSF01015840
[OFSF] wastewater metagenome; Exp Tend VB 100WW
95
168
+
Glu
CTC
[ENA]
¢þ
>WENV170604282
FUWD010382299
[FUWD] metagenome; unknown
330
405
+
Glu
CTC
[ENA]
¢þ
>WENV170620424
FUWD013031499
[FUWD] metagenome; unknown
1010
937
-
Glu
CTC
[ENA]
¢þ
>WENV170628569
FUWD013249011
[FUWD] metagenome; unknown
1010
937
-
Glu
CTC
[ENA]
¢þ
>WENV170645524
JNSK01000047
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13079
13006
-
Glu
CTC
[ENA]
¢þ
>C181018662
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
1150584
1150511
-
Glu
CTC
-
¡û
>C181018697
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
1280986
1280913
-
Glu
CTC
-
¡û
>C181020840
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
457909
457982
+
Glu
CTC
-
¡û
>C181020878
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
415935
416008
+
Glu
CTC
-
¡û
>C181020952
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
435408
435481
+
Glu
CTC
-
¡û
>C181020989
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
406931
407004
+
Glu
CTC
-
¡û
>C181021025
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
368496
368569
+
Glu
CTC
-
¡û
>C181021061
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
366974
367047
+
Glu
CTC
-
¡û
>C181021135
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
405872
405945
+
Glu
CTC
-
¡û
>C181021173
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
376230
376303
+
Glu
CTC
-
¡û
>C181021249
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
424157
424230
+
Glu
CTC
-
¡û
>C181021285
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
361804
361877
+
Glu
CTC
-
¡û
>C181021362
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
433622
433695
+
Glu
CTC
-
¡û
>WENV057428
AACY023294555
Marine microbial communities from Global Ocean Sampling (GOS)
98
23
-
Glu
CTC
[ENA]
>WENV057873
AACY023309487
Marine microbial communities from Global Ocean Sampling (GOS)
1010
1085
+
Glu
CTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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