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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464027 (33 seq.)
>W131158417
AQUA01000015
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
1704
1631
-
Leu
CAA
[ENA]
¡û
>W131237918
AUSE01000060
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
44252
44179
-
Leu
CAA
[ENA]
¡û
>WENV180110497
OAPN01000150
[OAPN] marine metagenome; 2011
1416
1343
-
Leu
CAA
[ENA]
¢þ
>WENV180591713
OCOV01083865
[OCOV] marine metagenome; ENVO:01000301
243
170
-
Leu
CAA
[ENA]
¢þ
>WENV181369477
OFQP01003760
[OFQP] freshwater metagenome; Freshwater Lake
161
88
-
Leu
CAA
[ENA]
¢þ
>WENV181400563
OFSF01010729
[OFSF] wastewater metagenome; Exp Tend VB 100WW
987
914
-
Leu
CAA
[ENA]
¢þ
>WENV001854
AACY020052883
Marine microbial communities from Global Ocean Sampling (GOS)
947
872
-
Leu
CAA
[ENA]
>WENV001940
AACY020054667
Marine microbial communities from Global Ocean Sampling (GOS)
1478
1553
+
Leu
CAA
[ENA]
>WENV183668652
ORJL010763043
[ORJL] groundwater metagenome; groundwater
232
305
+
Leu
CAA
[ENA]
¢þ
>WENV183670808
ORJL010987699
[ORJL] groundwater metagenome; groundwater
457
530
+
Leu
CAA
[ENA]
¢þ
>WENV170620333
FUWD013029687
[FUWD] metagenome; unknown
773
700
-
Leu
CAA
[ENA]
¢þ
>WENV170628470
FUWD013247303
[FUWD] metagenome; unknown
773
700
-
Leu
CAA
[ENA]
¢þ
>WENV170645475
JNSK01000001
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
43797
43724
-
Leu
CAA
[ENA]
¢þ
>WENV170645493
JNSK01000012
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6308
6235
-
Leu
CAA
[ENA]
¢þ
>WENV170961861
MLJW01003031
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1025
952
-
Leu
CAA
[ENA]
¢þ
>C181018664
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
975900
975827
-
Leu
CAA
-
¡û
>C181018698
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
1103280
1103207
-
Leu
CAA
-
¡û
>C181020843
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
625520
625593
+
Leu
CAA
-
¡û
>C181020880
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
581523
581596
+
Leu
CAA
-
¡û
>C181020954
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
587439
587512
+
Leu
CAA
-
¡û
>C181020990
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
577296
577369
+
Leu
CAA
-
¡û
>C181021026
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
552414
552487
+
Leu
CAA
-
¡û
>C181021064
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
546449
546522
+
Leu
CAA
-
¡û
>C181021138
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
567374
567447
+
Leu
CAA
-
¡û
>C181021174
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
548999
549072
+
Leu
CAA
-
¡û
>C181021252
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
586103
586176
+
Leu
CAA
-
¡û
>C181021288
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
527541
527614
+
Leu
CAA
-
¡û
>C181021338
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
741150
741077
-
Leu
CAA
-
¡û
>C181021365
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
597433
597506
+
Leu
CAA
-
¡û
>WENV057384
AACY023293268
Marine microbial communities from Global Ocean Sampling (GOS)
105
30
-
Leu
CAA
[ENA]
>WENV057650
AACY023301343
Marine microbial communities from Global Ocean Sampling (GOS)
721
646
-
Leu
CAA
[ENA]
>WENV057651
AACY023301360
Marine microbial communities from Global Ocean Sampling (GOS)
797
722
-
Leu
CAA
[ENA]
>WENV057951
AACY023312411
Marine microbial communities from Global Ocean Sampling (GOS)
1123
1048
-
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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