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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464087 (25 seq.)
>C171041978
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
3478483
3478408
-
Glu
TTC
-
¡û
>W131094269
AONQ01000065
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
21789
21864
+
Glu
TTC
[ENA]
¡û
>C013748
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
4105661
4105736
+
Glu
TTC
[Ensembl]
¡û
>WENV180304691
OBJI01278545
[OBJI] soil metagenome; soil
129
204
+
Glu
TTC
[ENA]
¢þ
>w001865
AAAP01003861
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
13753
13676
-
Glu
TTC
[ENA]
¡û
>W141096531
AVFL01000016
Alphaproteobacteria
Skermanella stibiiresistens SB22 [AVFL]
60259
60184
-
Glu
TTC
[ENA]
¡û
>W141222888
BACU01000189
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
11148
11073
-
Glu
TTC
[ENA]
¡û
>W141222911
BACU01000610
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
33385
33460
+
Glu
TTC
[ENA]
¡û
>W141244517
CAKO01000007
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
206553
206628
+
Glu
TTC
[ENA]
¡û
>WENV183672510
ORJL011175989
[ORJL] groundwater metagenome; groundwater
812
887
+
Glu
TTC
[ENA]
¢þ
>WENV170707907
LNAP01039052
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1913
1838
-
Glu
TTC
[ENA]
¢þ
>WENV170711142
LNFM01003739
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
39895
39820
-
Glu
TTC
[ENA]
¢þ
>C181058311
CP022111
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
228433
228508
+
Glu
TTC
-
¡û
>C181058312
CP022111
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
450037
450112
+
Glu
TTC
-
¡û
>C191071841
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
1209984
1210059
+
Glu
TTC
-
¡û
>W141803710
JPGX01000182
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
427
352
-
Glu
TTC
[ENA]
¡û
>W1910498986
FXXN01000026
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
578088
578163
+
Glu
TTC
[ENA]
¡û
>W1911802581
QYUK01000011
Alphaproteobacteria
Oleomonas cavernae K1W22B-8 [QYUK]
1679346
1679271
-
Glu
TTC
[ENA]
¡û
>W1810603335
QGLE01000001
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
81470
81545
+
Glu
TTC
[ENA]
¡û
>W1810603386
QGLF01000001
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [QGLF]
632301
632376
+
Glu
TTC
[ENA]
¡û
>W1511510907
JXSL01000030
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
123914
123989
+
Glu
TTC
[ENA]
¡û
>W11157255
AFBX01000080
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
72617
72542
-
Glu
TTC
[ENA]
¡û
>W11157296
AFBX01000930
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
829
904
+
Glu
TTC
[ENA]
¡û
>C161108406
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
1580977
1580902
-
Glu
TTC
-
¡û
>W1710548212
FODP01000001
Alphaproteobacteria
Rhodospirillales bacterium URHD0017 [FODP]
586514
586589
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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