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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464110 (146 seq.)
>W131158422
AQUB01000001
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
90584
90657
+
Ala
TGC
[ENA]
¡û
>W131162565
AQYZ01000003
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
28168
28241
+
Ala
TGC
[ENA]
¡û
>W131162903
AQZH01000006
Actinomycetota
actinobacterium SCGC AAA278-I18 [AQZH]
9431
9356
-
Ala
TGC
[ENA]
¡û
>W131162942
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
58843
58770
-
Ala
TGC
[ENA]
¡û
>W131162983
AQZJ01000015
Actinomycetota
actinobacterium SCGC AAA028-A23 [AQZJ]
28263
28188
-
Ala
TGC
[ENA]
¡û
>W131163000
AQZK01000009
Actinomycetota
actinobacterium SCGC AAA027-J17 [AQZK]
4524
4449
-
Ala
TGC
[ENA]
¡û
>W131163024
AQZL01000001
Actinomycetota
actinobacterium SCGC AAA023-D18 [AQZL]
50545
50470
-
Ala
TGC
[ENA]
¡û
>W131237903
AUSE01000028
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
1554
1627
+
Ala
TGC
[ENA]
¡û
>WENV016687
AACY020468245
Marine microbial communities from Global Ocean Sampling (GOS)
611
686
+
Ala
TGC
[ENA]
>WENV180110477
OAPN01000009
[OAPN] marine metagenome; 2011
3
76
+
Ala
TGC
[ENA]
¢þ
>WENV180110602
OAPN01001254
[OAPN] marine metagenome; 2011
956
1029
+
Ala
TGC
[ENA]
¢þ
>WENV180113891
OAPR01045012
[OAPR] marine metagenome; seawater
244
317
+
Ala
TGC
[ENA]
¢þ
>WENV180357377
OBNN01005889
[OBNN] marine metagenome; Coastal water
1107
1034
-
Ala
TGC
[ENA]
¢þ
>WENV180364231
OBNZ01159821
[OBNZ] marine metagenome; ENVO:00002010
146
73
-
Ala
TGC
[ENA]
¢þ
>WENV180377069
OBON01000100
[OBON] marine metagenome; sea water
7250
7177
-
Ala
TGC
[ENA]
¢þ
>WENV180377952
OBON01225934
[OBON] marine metagenome; sea water
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV180391314
OBPM01084406
[OBPM] marine metagenome; ENVO:00002010
231
304
+
Ala
TGC
[ENA]
¢þ
>WENV180393029
OBPP01054400
[OBPP] marine metagenome; ENVO:00002042
327
400
+
Ala
TGC
[ENA]
¢þ
>WENV180393832
OBPR01013471
[OBPR] marine metagenome; ENVO:00002042
291
218
-
Ala
TGC
[ENA]
¢þ
>WENV180591272
OCOV01006608
[OCOV] marine metagenome; ENVO:01000301
416
343
-
Ala
TGC
[ENA]
¢þ
>WENV017520
AACY020486093
Marine microbial communities from Global Ocean Sampling (GOS)
1942
2017
+
Ala
TGC
[ENA]
>WENV181367104
OFPT01000513
[OFPT] freshwater metagenome; Freshwater Lake
229
302
+
Ala
TGC
[ENA]
¢þ
>WENV181367136
OFPU01001088
[OFPU] freshwater metagenome; Freshwater Lake
289
362
+
Ala
TGC
[ENA]
¢þ
>WENV181367398
OFQB01000333
[OFQB] freshwater metagenome; Freshwater Lake
1941
2014
+
Ala
TGC
[ENA]
¢þ
>WENV181367617
OFQC01000077
[OFQC] freshwater metagenome; Freshwater Lake
5747
5674
-
Ala
TGC
[ENA]
¢þ
>WENV181368087
OFQH01000361
[OFQH] freshwater metagenome; Freshwater Lake
386
459
+
Ala
TGC
[ENA]
¢þ
>WENV181368132
OFQK01000130
[OFQK] freshwater metagenome; Freshwater Lake
3705
3778
+
Ala
TGC
[ENA]
¢þ
>WENV181368311
OFQL01000489
[OFQL] freshwater metagenome; Freshwater Lake
827
754
-
Ala
TGC
[ENA]
¢þ
>WENV181368454
OFQL01006120
[OFQL] freshwater metagenome; Freshwater Lake
896
969
+
Ala
TGC
[ENA]
¢þ
>WENV181368559
OFQM01000056
[OFQM] freshwater metagenome; Freshwater Lake
3711
3638
-
Ala
TGC
[ENA]
¢þ
>WENV181368766
OFQN01000361
[OFQN] freshwater metagenome; Freshwater Lake
5412
5485
+
Ala
TGC
[ENA]
¢þ
>WENV181368870
OFQN01002325
[OFQN] freshwater metagenome; Freshwater Lake
1330
1257
-
Ala
TGC
[ENA]
¢þ
>WENV181369121
OFQO01001202
[OFQO] freshwater metagenome; Freshwater Lake
369
442
+
Ala
TGC
[ENA]
¢þ
>WENV181369316
OFQP01000250
[OFQP] freshwater metagenome; Freshwater Lake
1111
1038
-
Ala
TGC
[ENA]
¢þ
>WENV181369418
OFQP01001796
[OFQP] freshwater metagenome; Freshwater Lake
1335
1262
-
Ala
TGC
[ENA]
¢þ
>WENV181369766
OFQR01000028
[OFQR] freshwater metagenome; Freshwater Lake
20773
20846
+
Ala
TGC
[ENA]
¢þ
>WENV181369912
OFQR01002239
[OFQR] freshwater metagenome; Freshwater Lake
884
811
-
Ala
TGC
[ENA]
¢þ
>WENV181370268
OFQS01001562
[OFQS] freshwater metagenome; Freshwater Lake
1281
1208
-
Ala
TGC
[ENA]
¢þ
>WENV181370288
OFQS01002297
[OFQS] freshwater metagenome; Freshwater Lake
1107
1034
-
Ala
TGC
[ENA]
¢þ
>WENV181370308
OFQS01002917
[OFQS] freshwater metagenome; Freshwater Lake
1044
971
-
Ala
TGC
[ENA]
¢þ
>WENV181370543
OFQT01000152
[OFQT] freshwater metagenome; Freshwater Lake
3196
3269
+
Ala
TGC
[ENA]
¢þ
>WENV181370638
OFQT01001378
[OFQT] freshwater metagenome; Freshwater Lake
211
138
-
Ala
TGC
[ENA]
¢þ
>WENV181376882
OFRA01000455
[OFRA] wastewater metagenome; Lake Maggiore Verbania
7740
7667
-
Ala
TGC
[ENA]
¢þ
>WENV181376970
OFRA01000916
[OFRA] wastewater metagenome; Lake Maggiore Verbania
79
152
+
Ala
TGC
[ENA]
¢þ
>WENV181377530
OFRA01014901
[OFRA] wastewater metagenome; Lake Maggiore Verbania
361
288
-
Ala
TGC
[ENA]
¢þ
>WENV181379650
OFRD01005023
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1092
1019
-
Ala
TGC
[ENA]
¢þ
>WENV181384037
OFRH01009031
[OFRH] wastewater metagenome; Exp Tend NO 100WW
710
637
-
Ala
TGC
[ENA]
¢þ
>WENV181384662
OFRI01004392
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1570
1497
-
Ala
TGC
[ENA]
¢þ
>WENV181385024
OFRI01026678
[OFRI] wastewater metagenome; Exp Tend VB 90WW
93
20
-
Ala
TGC
[ENA]
¢þ
>WENV181386131
OFRL01000803
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
12192
12119
-
Ala
TGC
[ENA]
¢þ
>WENV181386134
OFRL01000822
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
2441
2514
+
Ala
TGC
[ENA]
¢þ
>WENV181386638
OFRL01009091
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1810
1883
+
Ala
TGC
[ENA]
¢þ
>WENV181386961
OFRL01027138
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
83
156
+
Ala
TGC
[ENA]
¢þ
>WENV181391266
OFRS01000896
[OFRS] freshwater metagenome; Freshwater Lake
531
458
-
Ala
TGC
[ENA]
¢þ
>WENV181395674
OFSB01000242
[OFSB] freshwater metagenome; Freshwater Lake
5483
5410
-
Ala
TGC
[ENA]
¢þ
>WENV181395736
OFSB01001185
[OFSB] freshwater metagenome; Freshwater Lake
1386
1459
+
Ala
TGC
[ENA]
¢þ
>WENV181400304
OFSF01004210
[OFSF] wastewater metagenome; Exp Tend VB 100WW
445
372
-
Ala
TGC
[ENA]
¢þ
>WENV181400402
OFSF01005670
[OFSF] wastewater metagenome; Exp Tend VB 100WW
2539
2612
+
Ala
TGC
[ENA]
¢þ
>WENV181401045
OFSF01045659
[OFSF] wastewater metagenome; Exp Tend VB 100WW
239
166
-
Ala
TGC
[ENA]
¢þ
>W141170886
AXZA01000019
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
36159
36084
-
Ala
TGC
[ENA]
¡û
>WENV181840672
OGVP01006867
[OGVP] freshwater metagenome; freshwater
381
308
-
Ala
TGC
[ENA]
¢þ
>WENV181843132
OGVU01001345
[OGVU] freshwater metagenome; freshwater
2402
2329
-
Ala
TGC
[ENA]
¢þ
>WENV181845284
OGVX01001109
[OGVX] freshwater metagenome; freshwater
2954
3027
+
Ala
TGC
[ENA]
¢þ
>WENV181845355
OGVX01001769
[OGVX] freshwater metagenome; freshwater
1168
1095
-
Ala
TGC
[ENA]
¢þ
>WENV181847923
OGVZ01000853
[OGVZ] freshwater metagenome; freshwater
2893
2966
+
Ala
TGC
[ENA]
¢þ
>WENV181848091
OGVZ01002092
[OGVZ] freshwater metagenome; freshwater
3449
3522
+
Ala
TGC
[ENA]
¢þ
>WENV181851113
OGWE01009035
[OGWE] freshwater metagenome; freshwater
733
806
+
Ala
TGC
[ENA]
¢þ
>WENV181853155
OGWI01000041
[OGWI] freshwater metagenome; freshwater
10587
10514
-
Ala
TGC
[ENA]
¢þ
>WENV181853687
OGWI01036212
[OGWI] freshwater metagenome; freshwater
199
126
-
Ala
TGC
[ENA]
¢þ
>WENV181855104
OGWL01000622
[OGWL] freshwater metagenome; freshwater
860
787
-
Ala
TGC
[ENA]
¢þ
>WENV181855717
OGWM01000745
[OGWM] freshwater metagenome; freshwater
3059
2986
-
Ala
TGC
[ENA]
¢þ
>WENV181855975
OGWM01009140
[OGWM] freshwater metagenome; freshwater
159
232
+
Ala
TGC
[ENA]
¢þ
>WENV181857171
OGWN01062299
[OGWN] freshwater metagenome; freshwater
159
232
+
Ala
TGC
[ENA]
¢þ
>W141202941
AZHS01000023
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
13150
13077
-
Ala
TGC
[ENA]
¡û
>WENV182865842
OKRQ01004271
[OKRQ] freshwater metagenome; freshwater
931
858
-
Ala
TGC
[ENA]
¢þ
>WENV001932
AACY020054386
Marine microbial communities from Global Ocean Sampling (GOS)
421
346
-
Ala
TGC
[ENA]
>WENV002037
AACY020057270
Marine microbial communities from Global Ocean Sampling (GOS)
206
131
-
Ala
TGC
[ENA]
>WENV170570423
FLOH01000004
[FLOH] marine metagenome; water
745940
746015
+
Ala
TGC
[ENA]
¢þ
>WENV170572310
FLOH01000729
[FLOH] marine metagenome; water
5290
5217
-
Ala
TGC
[ENA]
¢þ
>WENV170604041
FUWD010355770
[FUWD] metagenome; unknown
303
228
-
Ala
TGC
[ENA]
¢þ
>WENV170617571
FUWD012930471
[FUWD] metagenome; unknown
438
511
+
Ala
TGC
[ENA]
¢þ
>WENV170618365
FUWD012964737
[FUWD] metagenome; unknown
550
477
-
Ala
TGC
[ENA]
¢þ
>WENV170618488
FUWD012971124
[FUWD] metagenome; unknown
158
83
-
Ala
TGC
[ENA]
¢þ
>WENV170622152
FUWD013089883
[FUWD] metagenome; unknown
166
241
+
Ala
TGC
[ENA]
¢þ
>WENV170625262
FUWD013194495
[FUWD] metagenome; unknown
37
110
+
Ala
TGC
[ENA]
¢þ
>WENV170625594
FUWD013201178
[FUWD] metagenome; unknown
2016
2091
+
Ala
TGC
[ENA]
¢þ
>WENV170625986
FUWD013210960
[FUWD] metagenome; unknown
2759
2684
-
Ala
TGC
[ENA]
¢þ
>WENV170625988
FUWD013210961
[FUWD] metagenome; unknown
80
5
-
Ala
TGC
[ENA]
¢þ
>WENV170626257
FUWD013217598
[FUWD] metagenome; unknown
1306
1231
-
Ala
TGC
[ENA]
¢þ
>WENV170630353
FUWD013304816
[FUWD] metagenome; unknown
166
241
+
Ala
TGC
[ENA]
¢þ
>WENV170633504
FUWD013397384
[FUWD] metagenome; unknown
37
110
+
Ala
TGC
[ENA]
¢þ
>WENV170633819
FUWD013403394
[FUWD] metagenome; unknown
2016
2091
+
Ala
TGC
[ENA]
¢þ
>WENV170634212
FUWD013412358
[FUWD] metagenome; unknown
2759
2684
-
Ala
TGC
[ENA]
¢þ
>WENV170634214
FUWD013412359
[FUWD] metagenome; unknown
80
5
-
Ala
TGC
[ENA]
¢þ
>WENV170645474
JNSJ01000014
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
738
663
-
Ala
TGC
[ENA]
¢þ
>C181018646
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
240997
241070
+
Ala
TGC
-
¡û
>C181018713
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
246260
246187
-
Ala
TGC
-
¡û
>C181018722
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
323816
323889
+
Ala
TGC
-
¡û
>C181020796
CP016768
Actinomycetota
Candidatus Nanopelagicus limnes [CP016768]
9232
9305
+
Ala
TGC
-
¡û
>C181020832
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
9456
9529
+
Ala
TGC
-
¡û
>C181020908
CP016771
Actinomycetota
Candidatus Nanopelagicus hibericus [CP016771]
9391
9464
+
Ala
TGC
-
¡û
>C181020969
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1334171
1334098
-
Ala
TGC
-
¡û
>C181021005
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1309629
1309556
-
Ala
TGC
-
¡û
>C181021041
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1299390
1299317
-
Ala
TGC
-
¡û
>C181021078
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1293996
1293923
-
Ala
TGC
-
¡û
>C181021091
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
9329
9402
+
Ala
TGC
-
¡û
>C181021203
CP016779
Actinomycetota
Candidatus Nanopelagicus abundans [CP016779]
9359
9432
+
Ala
TGC
-
¡û
>C181021240
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
9507
9580
+
Ala
TGC
-
¡û
>C181021316
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
9303
9376
+
Ala
TGC
-
¡û
>C181021353
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
9546
9619
+
Ala
TGC
-
¡û
>WENV023340
AACY020718528
Marine microbial communities from Global Ocean Sampling (GOS)
328
403
+
Ala
TGC
[ENA]
>WENV030760
AACY021308819
Marine microbial communities from Global Ocean Sampling (GOS)
378
303
-
Ala
TGC
[ENA]
>WENV057275
AACY023289938
Marine microbial communities from Global Ocean Sampling (GOS)
1044
1119
+
Ala
TGC
[ENA]
>WENV057652
AACY023301497
Marine microbial communities from Global Ocean Sampling (GOS)
1208
1133
-
Ala
TGC
[ENA]
>WENV057663
AACY023301922
Marine microbial communities from Global Ocean Sampling (GOS)
1329
1404
+
Ala
TGC
[ENA]
>WENV057842
AACY023308524
Marine microbial communities from Global Ocean Sampling (GOS)
463
388
-
Ala
TGC
[ENA]
>WENV057913
AACY023310928
Marine microbial communities from Global Ocean Sampling (GOS)
1297
1222
-
Ala
TGC
[ENA]
>WENV058095
AACY023317354
Marine microbial communities from Global Ocean Sampling (GOS)
170
95
-
Ala
TGC
[ENA]
>WENV058125
AACY023318494
Marine microbial communities from Global Ocean Sampling (GOS)
73
148
+
Ala
TGC
[ENA]
>W121070024
AJWB01000073
Actinomycetota
actinobacterium SCGC AAA027-L06 [AJWB]
15145
15220
+
Ala
TGC
[ENA]
¡û
>WENV058230
AACY023321915
Marine microbial communities from Global Ocean Sampling (GOS)
876
953
+
Ala
TGC
[ENA]
>WENV058408
AACY023328273
Marine microbial communities from Global Ocean Sampling (GOS)
811
886
+
Ala
TGC
[ENA]
>WENV058514
AACY023331643
Marine microbial communities from Global Ocean Sampling (GOS)
570
645
+
Ala
TGC
[ENA]
>WENV058595
AACY023334958
Marine microbial communities from Global Ocean Sampling (GOS)
510
585
+
Ala
TGC
[ENA]
>WENV059051
AACY023352390
Marine microbial communities from Global Ocean Sampling (GOS)
533
458
-
Ala
TGC
[ENA]
>WENV059062
AACY023352582
Marine microbial communities from Global Ocean Sampling (GOS)
860
785
-
Ala
TGC
[ENA]
>WENV061190
AACY023426170
Marine microbial communities from Global Ocean Sampling (GOS)
1416
1341
-
Ala
TGC
[ENA]
>WENV006515
AACY020175185
Marine microbial communities from Global Ocean Sampling (GOS)
1234
1309
+
Ala
TGC
[ENA]
>WENV006516
AACY020175190
Marine microbial communities from Global Ocean Sampling (GOS)
6665
6590
-
Ala
TGC
[ENA]
>WENV006911
AACY020181502
Marine microbial communities from Global Ocean Sampling (GOS)
2064
2139
+
Ala
TGC
[ENA]
>W1610597570
LFFA01000018
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
56919
56844
-
Ala
TGC
[ENA]
¡û
>W1610625350
LIAM01000026
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
9989
9916
-
Ala
TGC
[ENA]
¡û
>W1610625381
LIAN01000345
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1108
1035
-
Ala
TGC
[ENA]
¡û
>W1610625782
LIBD01000013
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
2963
2888
-
Ala
TGC
[ENA]
¡û
>W1610625832
LIBF01000017
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
9458
9533
+
Ala
TGC
[ENA]
¡û
>W1610625851
LIBG01000010
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
2722
2647
-
Ala
TGC
[ENA]
¡û
>W1610626271
LIBZ01000006
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
14813
14888
+
Ala
TGC
[ENA]
¡û
>W1610626724
LICQ01000261
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
707
632
-
Ala
TGC
[ENA]
¡û
>W1710718817
LFFA01000018
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
56919
56844
-
Ala
TGC
[ENA]
¡û
>W1710756477
LIAM01000026
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
9989
9916
-
Ala
TGC
[ENA]
¡û
>W1710756508
LIAN01000345
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1108
1035
-
Ala
TGC
[ENA]
¡û
>W1710756909
LIBD01000013
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
2963
2888
-
Ala
TGC
[ENA]
¡û
>W1710756959
LIBF01000017
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
9458
9533
+
Ala
TGC
[ENA]
¡û
>W1710756978
LIBG01000010
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
2722
2647
-
Ala
TGC
[ENA]
¡û
>W1710757398
LIBZ01000006
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
14813
14888
+
Ala
TGC
[ENA]
¡û
>W1710757851
LICQ01000261
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
707
632
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
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(Sample source for ENV)
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Direction
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Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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