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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464214 (96 seq.)
>W1711047626
LRPD01000007
Gammaproteobacteria
Acinetobacter sp. NRRL B-65365 [LRPD]
11705
11630
-
Ala
GGC
[ENA]
¡û
>W1711125276
LUNC01000003
Gammaproteobacteria
Acinetobacter sp. REDSEA-S21_B14 [LUNC]
5002
4927
-
Ala
GGC
[ENA]
¡û
>W1711283529
LZPJ01000017
Gammaproteobacteria
Acinetobacter sp. YK3 [LZPJ]
11643
11718
+
Ala
GGC
[ENA]
¡û
>W1711391254
MELG01000104
Gammaproteobacteria
Acinetobacter sp. GWC1_38_13 [MELG]
11901
11976
+
Ala
GGC
[ENA]
¡û
>W1711492423
MKKJ01000023
Gammaproteobacteria
Acinetobacter proteolyticus [MKKJ]
287721
287796
+
Ala
GGC
[ENA]
¡û
>W1711501426
MKRP01001435
Gammaproteobacteria
Acinetobacter sp. 39-4 [MKRP]
671
596
-
Ala
GGC
[ENA]
¡û
>W1711502348
MKSP01000008
Gammaproteobacteria
Acinetobacter sp. 38-8 [MKSP]
32200
32275
+
Ala
GGC
[ENA]
¡û
>W1712084242
NHRK01000005
Gammaproteobacteria
Acinetobacter junii [NHRK]
106416
106491
+
Ala
GGC
[ENA]
¡û
>W1712084313
NHRL01000003
Gammaproteobacteria
Acinetobacter sp. WCHA45 [NHRL]
58088
58013
-
Ala
GGC
[ENA]
¡û
>W1712084572
NHRP01000010
Gammaproteobacteria
Acinetobacter sp. WCHA39 [NHRP]
78721
78796
+
Ala
GGC
[ENA]
¡û
>W1712084633
NHRQ01000003
Gammaproteobacteria
Acinetobacter sp. WCHA29 [NHRQ]
210497
210422
-
Ala
GGC
[ENA]
¡û
>C171053005
CP016895
Gammaproteobacteria
Acinetobacter larvae BRTC-1 [CP016895]
3292878
3292953
+
Ala
GGC
-
¡û
>C171088701
CP019041
Gammaproteobacteria
Acinetobacter junii 65 [CP019041]
566565
566490
-
Ala
GGC
-
¡û
>W131042223
AMJF01000098
Gammaproteobacteria
Acinetobacter junii TG19608 [AMJF]
13014
12939
-
Ala
GGC
[ENA]
¡û
>W131042652
AMJM01000076
Gammaproteobacteria
Acinetobacter sp. TG19627 [AMJM]
166901
166976
+
Ala
GGC
[ENA]
¡û
>W131053047
AMZS01000008
Gammaproteobacteria
Acinetobacter sp. WC-323 WC-323 [AMZS]
49035
49110
+
Ala
GGC
[ENA]
¡û
>W131112958
APOI01000030
Gammaproteobacteria
Acinetobacter proteolyticus NIPH 809 [APOI]
303721
303646
-
Ala
GGC
[ENA]
¡û
>W131112989
APOJ01000016
Gammaproteobacteria
Acinetobacter modestus NIPH 236 [APOJ]
251228
251153
-
Ala
GGC
[ENA]
¡û
>W131114268
APPC01000015
Gammaproteobacteria
Acinetobacter vivianii NIPH 758 [APPC]
183925
184000
+
Ala
GGC
[ENA]
¡û
>W131114606
APPH01000006
Gammaproteobacteria
Acinetobacter higginsii CIP 56.2 [APPH]
373570
373495
-
Ala
GGC
[ENA]
¡û
>W131115037
APPN01000083
Gammaproteobacteria
Acinetobacter gerneri DSM 14967 = CIP 107464 [APPN]
217595
217670
+
Ala
GGC
[ENA]
¡û
>W131115330
APPS01000040
Gammaproteobacteria
Acinetobacter junii CIP 107470 [APPS]
66806
66881
+
Ala
GGC
[ENA]
¡û
>W131115599
APPW01000004
Gammaproteobacteria
Acinetobacter junii NIPH 182 [APPW]
243657
243582
-
Ala
GGC
[ENA]
¡û
>W131115710
APPX01000033
Gammaproteobacteria
Acinetobacter junii CIP 64.5 [APPX]
108450
108525
+
Ala
GGC
[ENA]
¡û
>W131116611
APQK01000009
Gammaproteobacteria
Acinetobacter beijerinckii ANC 3835 [APQK]
79370
79445
+
Ala
GGC
[ENA]
¡û
>W131116677
APQL01000005
Gammaproteobacteria
Acinetobacter beijerinckii CIP 110307 [APQL]
407161
407236
+
Ala
GGC
[ENA]
¡û
>W131118212
APRH01000010
Gammaproteobacteria
Acinetobacter sp. ANC 3929 [APRH]
170703
170778
+
Ala
GGC
[ENA]
¡û
>W131118280
APRI01000018
Gammaproteobacteria
Acinetobacter sp. NIPH 284 [APRI]
35113
35188
+
Ala
GGC
[ENA]
¡û
>W131118500
APRL01000010
Gammaproteobacteria
Acinetobacter dispersus ANC 4105 [APRL]
171544
171619
+
Ala
GGC
[ENA]
¡û
>W131118634
APRN01000033
Gammaproteobacteria
Acinetobacter higginsii CIP 70.18 [APRN]
183549
183624
+
Ala
GGC
[ENA]
¡û
>W131118701
APRO01000007
Gammaproteobacteria
Acinetobacter dispersus NIPH 1867 [APRO]
178807
178882
+
Ala
GGC
[ENA]
¡û
>W131118814
APRP01000034
Gammaproteobacteria
Acinetobacter modestus ANC 3862 [APRP]
61663
61588
-
Ala
GGC
[ENA]
¡û
>W131118914
APRR01000006
Gammaproteobacteria
Acinetobacter courvalinii NIPH 1847 [APRR]
180930
181005
+
Ala
GGC
[ENA]
¡û
>W131119037
APRT01000004
Gammaproteobacteria
Acinetobacter sp. CIP 64.2 [APRT]
174041
173966
-
Ala
GGC
[ENA]
¡û
>W131119319
APRW01000016
Gammaproteobacteria
Acinetobacter vivianii NIPH 2168 [APRW]
183167
183242
+
Ala
GGC
[ENA]
¡û
>W131119535
APRZ01000019
Gammaproteobacteria
Acinetobacter colistiniresistens NIPH 1859 [APRZ]
162331
162256
-
Ala
GGC
[ENA]
¡û
>W131119582
APSA01000003
Gammaproteobacteria
Acinetobacter courvalinii NIPH 3623 [APSA]
268739
268664
-
Ala
GGC
[ENA]
¡û
>W131119690
APSB01000022
Gammaproteobacteria
Acinetobacter sp. NIPH 2100 [APSB]
185803
185878
+
Ala
GGC
[ENA]
¡û
>W131119831
APSD01000035
Gammaproteobacteria
Acinetobacter higginsii ANC 3880 [APSD]
309548
309473
-
Ala
GGC
[ENA]
¡û
>W131144397
AQFL01000004
Gammaproteobacteria
Acinetobacter genomosp. 15BJ CIP 110321 [AQFL]
199107
199182
+
Ala
GGC
[ENA]
¡û
>W131193996
ASQH01000020
Gammaproteobacteria
Acinetobacter gyllenbergii MTCC 11365 [ASQH]
31347
31272
-
Ala
GGC
[ENA]
¡û
>W131203440
ASYY01000044
Gammaproteobacteria
Acinetobacter gerneri MTCC 9824 [ASYY]
15098
15023
-
Ala
GGC
[ENA]
¡û
>W131203493
ASYZ01000085
Gammaproteobacteria
Acinetobacter junii MTCC 11364 [ASYZ]
27605
27530
-
Ala
GGC
[ENA]
¡û
>W131206789
ATGG01000006
Gammaproteobacteria
Acinetobacter gyllenbergii CIP 110306 [ATGG]
31403
31328
-
Ala
GGC
[ENA]
¡û
>W131206928
ATGI01000003
Gammaproteobacteria
Acinetobacter rudis CIP 110305 [ATGI]
60221
60146
-
Ala
GGC
[ENA]
¡û
>W131207067
ATGK01000004
Gammaproteobacteria
Acinetobacter colistiniresistens NIPH 2036 [ATGK]
89222
89147
-
Ala
GGC
[ENA]
¡û
>WENV180006350
FLRY01015817
[FLRY] metagenome; saliva
492
567
+
Ala
GGC
[ENA]
¢þ
>WENV181223410
OFDC01012212
[OFDC] hot springs metagenome; Water
153
78
-
Ala
GGC
[ENA]
¢þ
>W141177177
AYEQ01000170
Gammaproteobacteria
Acinetobacter gyllenbergii NIPH 230 [AYEQ]
208
133
-
Ala
GGC
[ENA]
¡û
>W141238485
BBLI01000008
Gammaproteobacteria
Acinetobacter gerneri [BBLI]
78814
78889
+
Ala
GGC
[ENA]
¡û
>WENV183732949
PJTY01000006
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
270172
270097
-
Ala
GGC
[ENA]
¢þ
>WENV183734496
PJTZ01012293
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
535
610
+
Ala
GGC
[ENA]
¢þ
>WENV183744125
PJUK01000635
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
541
466
-
Ala
GGC
[ENA]
¢þ
>W141441665
JEWN01000002
Gammaproteobacteria
Acinetobacter baumannii 1437282 [JEWN]
281782
281707
-
Ala
GGC
[ENA]
¡û
>W141442170
JEWS01000002
Gammaproteobacteria
Acinetobacter baumannii 146457 [JEWS]
284581
284506
-
Ala
GGC
[ENA]
¡û
>WENV170744473
LULX01001859
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
1994
1919
-
Ala
GGC
[ENA]
¢þ
>W141479799
JFWP02000004
Gammaproteobacteria
Acinetobacter sp. 1000160 1000160 [JFWP]
284430
284355
-
Ala
GGC
[ENA]
¡û
>C181103339
CP024632
Gammaproteobacteria
Acinetobacter junii lzh-X15 [CP024632]
314589
314514
-
Ala
GGC
-
¡û
>C181166927
CP028561
Gammaproteobacteria
Acinetobacter sp. WCHA45 [CP028561]
245432
245357
-
Ala
GGC
-
¡û
>C181168387
CP028800
Gammaproteobacteria
Acinetobacter junii WCHAJ59 [CP028800]
321932
321857
-
Ala
GGC
-
¡û
>W1910921931
NIFO01000004
Gammaproteobacteria
Acinetobacter piscicola LW15 [NIFO]
110182
110107
-
Ala
GGC
[ENA]
¡û
>W1911541196
OOGT01000101
Gammaproteobacteria
Acinetobacter stercoris KPC-SM-21 [OOGT]
5719
5794
+
Ala
GGC
[ENA]
¡û
>W1911662465
QFGM01000001
Gammaproteobacteria
Acinetobacter junii RS03 [QFGM]
89655
89580
-
Ala
GGC
[ENA]
¡û
>W1911663208
QFHD01000001
Gammaproteobacteria
Acinetobacter junii RC08 [QFHD]
81448
81373
-
Ala
GGC
[ENA]
¡û
>W1810016470
BGNT01000046
Gammaproteobacteria
Acinetobacter colistiniresistens 13BJ NR1165 [BGNT]
25079
25004
-
Ala
GGC
[ENA]
¡û
>W1810043937
BHGD01000062
Gammaproteobacteria
Acinetobacter colistiniresistens OCU_Ac7 [BHGD]
18639
18564
-
Ala
GGC
[ENA]
¡û
>W1810149209
PISJ01000002
Gammaproteobacteria
Acinetobacter proteolyticus 2P01AA [PISJ]
183392
183467
+
Ala
GGC
[ENA]
¡û
>W1810537586
QDFG01000040
Gammaproteobacteria
Acinetobacter junii SC54 [QDFG]
1041
966
-
Ala
GGC
[ENA]
¡û
>W1810537631
QDFH01000036
Gammaproteobacteria
Acinetobacter junii SC57 [QDFH]
1041
966
-
Ala
GGC
[ENA]
¡û
>W1810582620
QEWH01000055
Gammaproteobacteria
Acinetobacter junii SC22 [QEWH]
1041
966
-
Ala
GGC
[ENA]
¡û
>W10102418
ACPM01000082
Gammaproteobacteria
Acinetobacter junii SH205 [ACPM]
44854
44929
+
Ala
GGC
[ENA]
¡û
>W1510013449
BBOS01000015
Gammaproteobacteria
Acinetobacter junii NBRC 110497 [BBOS]
32273
32348
+
Ala
GGC
[ENA]
¡û
>W1510015985
BBRX01000046
Gammaproteobacteria
Acinetobacter rudis DSM 24031 [BBRX]
12072
12147
+
Ala
GGC
[ENA]
¡û
>W1510016271
BBSD01000003
Gammaproteobacteria
Acinetobacter junii KCTC 12416 [BBSD]
42828
42903
+
Ala
GGC
[ENA]
¡û
>W1510016481
BBSG01000059
Gammaproteobacteria
Acinetobacter junii NBRC 109759 [BBSG]
3272
3347
+
Ala
GGC
[ENA]
¡û
>W1510017269
BBTF01000040
Gammaproteobacteria
Acinetobacter sp. NBRC 110496 [BBTF]
146
71
-
Ala
GGC
[ENA]
¡û
>W1510017491
BBTK01000021
Gammaproteobacteria
Acinetobacter gyllenbergii GTC 14627 [BBTK]
31309
31234
-
Ala
GGC
[ENA]
¡û
>W1510017531
BBTL01000008
Gammaproteobacteria
Acinetobacter beijerinckii GTC 14628 [BBTL]
73934
73859
-
Ala
GGC
[ENA]
¡û
>W11102574
ACPM01000082
Gammaproteobacteria
Acinetobacter junii SH205 [ACPM]
44854
44929
+
Ala
GGC
[ENA]
¡û
>W1511249141
JNVW01000001
Gammaproteobacteria
Acinetobacter sp. MN12 [JNVW]
32908
32983
+
Ala
GGC
[ENA]
¡û
>W1511352234
JROB01000001
Gammaproteobacteria
Acinetobacter sp. MN12 [JROB]
32908
32983
+
Ala
GGC
[ENA]
¡û
>W1511387412
JSUS01000071
Gammaproteobacteria
Acinetobacter sp. A47 [JSUS]
405195
405270
+
Ala
GGC
[ENA]
¡û
>W1511391706
JSZD01000014
Gammaproteobacteria
Acinetobacter sp. neg1 [JSZD]
40028
39953
-
Ala
GGC
[ENA]
¡û
>W1511481444
JWJT01000005
Gammaproteobacteria
Acinetobacter junii L20 [JWJT]
12039
12114
+
Ala
GGC
[ENA]
¡û
>W1511563827
LACJ01000004
Gammaproteobacteria
Acinetobacter parvus CM11 [LACJ]
161732
161807
+
Ala
GGC
[ENA]
¡û
>W1511595576
LBMZ01000122
Gammaproteobacteria
Acinetobacter sp. AG1 [LBMZ]
86903
86828
-
Ala
GGC
[ENA]
¡û
>W11163721
AFIE01000008
Gammaproteobacteria
Acinetobacter sp. P8-3-8 [AFIE]
91735
91660
-
Ala
GGC
[ENA]
¡û
>W121047082
AIED01000001
Gammaproteobacteria
Acinetobacter baumannii NCTC 7422 [AIED]
172557
172632
+
Ala
GGC
[ENA]
¡û
>W121123521
BAEB01000019
Gammaproteobacteria
Acinetobacter sp. NBRC 100985 [BAEB]
155520
155595
+
Ala
GGC
[ENA]
¡û
>W1610538215
JRUJ01000350
Gammaproteobacteria
Acinetobacter venetianus [JRUJ]
1988
1913
-
Ala
GGC
[ENA]
¡û
>W1610538325
JRVA01000003
Gammaproteobacteria
Acinetobacter gyllenbergii [JRVA]
281428
281353
-
Ala
GGC
[ENA]
¡û
>W1610888755
LRPD01000007
Gammaproteobacteria
Acinetobacter sp. NRRL B-65365 [LRPD]
11705
11630
-
Ala
GGC
[ENA]
¡û
>W1610936209
LUNC01000003
Gammaproteobacteria
Acinetobacter sp. REDSEA-S21_B14 [LUNC]
5002
4927
-
Ala
GGC
[ENA]
¡û
>W1710610431
FZLN01000003
Gammaproteobacteria
Acinetobacter apis [FZLN]
93879
93804
-
Ala
GGC
[ENA]
¡û
>W1710640684
JRUJ01000350
Gammaproteobacteria
Acinetobacter venetianus [JRUJ]
1988
1913
-
Ala
GGC
[ENA]
¡û
>W1710640794
JRVA01000003
Gammaproteobacteria
Acinetobacter gyllenbergii [JRVA]
281428
281353
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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