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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464288 (25 seq.)
>W131235300
AULL01000017
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
117539
117466
-
Gly
GCC
[ENA]
¡û
>W1711503252
MKTK01000038
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
276719
276646
-
Gly
GCC
[ENA]
¡û
>W1712082001
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
1367973
1367900
-
Gly
GCC
[ENA]
¡û
>W141291542
JASZ01000281
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
2451
2524
+
Gly
GCC
[ENA]
¡û
>WENV170009778
APMI01002882
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1769
1696
-
Gly
GCC
[ENA]
¢þ
>C191025411
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
2469715
2469642
-
Gly
GCC
-
¡û
>C191116448
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
608374
608447
+
Gly
GCC
-
¡û
>C191120414
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
920751
920826
+
Gly
GCC
-
¡û
>C191120454
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2115235
2115310
+
Gly
GCC
-
¡û
>C191156073
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
1078186
1078111
-
Gly
GCC
-
¡û
>C191211152
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
2448951
2448876
-
Gly
GCC
-
¡û
>C191212978
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2075605
2075678
+
Gly
GCC
-
¡û
>W141802065
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
446117
446042
-
Gly
GCC
[ENA]
¡û
>C09106219
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
2681179
2681254
+
Gly
GCC
[Ensembl]
¡û
>W1910933647
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
939285
939212
-
Gly
GCC
[ENA]
¡û
>W1511390833
JSYK01000001
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
180474
180549
+
Gly
GCC
[ENA]
¡û
>W1511390874
JSYL01000002
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
626630
626703
+
Gly
GCC
[ENA]
¡û
>W1511685292
LFNG01000004
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
162615
162688
+
Gly
GCC
[ENA]
¡û
>W1610095095
CYUH01000014
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
241358
241285
-
Gly
GCC
[ENA]
¡û
>W1710097890
CYUH01000014
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
241358
241285
-
Gly
GCC
[ENA]
¡û
>W1710538656
FNUS01000003
Bacteroidota
Halpernia humi [FNUS]
179898
179823
-
Gly
GCC
[ENA]
¡û
>W1710554940
FOIX01000001
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
455113
455038
-
Gly
GCC
[ENA]
¡û
>W1710557437
FOLA01000002
Bacteroidota
Kaistella jeonii [FOLA]
180733
180660
-
Gly
GCC
[ENA]
¡û
>W1710565947
FORQ01000002
Bacteroidota
Kaistella treverensis treverense [FORQ]
390387
390312
-
Gly
GCC
[ENA]
¡û
>W1710598917
FTOI01000005
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
67139
67212
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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