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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464381 (61 seq.)
>W1710877092
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70371
70446
+
Lys
TTT
[ENA]
¡û
>W1710877124
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
538
613
+
Lys
TTT
[ENA]
¡û
>W1710909404
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258269
258344
+
Lys
TTT
[ENA]
¡û
>W1711116964
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
563
638
+
Lys
TTT
[ENA]
¡û
>W1711117015
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
599
524
-
Lys
TTT
[ENA]
¡û
>W131241546
BARY01000002
Bacillota
Exiguobacterium sp. OS-77 [BARY]
261344
261419
+
Lys
TTT
[ENA]
¡û
>W1711603257
MOLV01000005
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
403
328
-
Lys
TTT
[ENA]
¡û
>W1711603308
MOLV01000046
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
782
707
-
Lys
TTT
[ENA]
¡û
>W1711632659
MPSZ01000004
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
221898
221973
+
Lys
TTT
[ENA]
¡û
>W1711632685
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
543
468
-
Lys
TTT
[ENA]
¡û
>W1712017304
NESR01000017
Bacillota
Kurthia gibsonii [NESR]
398
323
-
Lys
TTT
[ENA]
¡û
>W1712017334
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
608
533
-
Lys
TTT
[ENA]
¡û
>C171040521
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
462080
462155
+
Lys
TTT
-
¡û
>C171040576
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
178894
178819
-
Lys
TTT
-
¡û
>C171072096
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
34946
35021
+
Lys
TTT
-
¡û
>C171072154
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
3002702
3002627
-
Lys
TTT
-
¡û
>w003703
AADW02000048
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
203
278
+
Lys
TTT
[ENA]
¡û
>w003697
AADW02000036
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
14095
14170
+
Lys
TTT
[ENA]
¡û
>w003664
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
2003
2080
+
Lys
TTT
[ENA]
¡û
>C08004775
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
35036
35111
+
Lys
TTT
[Ensembl]
¡û
>C08004826
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
2789664
2789592
-
Lys
TTT
[Ensembl]
¡û
>WENV170023051
BCQK01112311
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
376
301
-
Lys
TTT
[ENA]
¢þ
>W141484771
JFYW01000005
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
189
264
+
Lys
TTT
[ENA]
¡û
>W141484798
JFYW01000010
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
242214
242289
+
Lys
TTT
[ENA]
¡û
>W141563050
JHZS01000001
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
256527
256602
+
Lys
TTT
[ENA]
¡û
>W141563158
JHZU01000002
Bacillota
Exiguobacterium undae 190-11 [JHZU]
635
560
-
Lys
TTT
[ENA]
¡û
>W141563173
JHZU01000004
Bacillota
Exiguobacterium undae 190-11 [JHZU]
268290
268365
+
Lys
TTT
[ENA]
¡û
>W141563219
JHZV01000002
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
646
571
-
Lys
TTT
[ENA]
¡û
>W141563231
JHZV01000003
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
285467
285542
+
Lys
TTT
[ENA]
¡û
>W141701495
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1439746
1439821
+
Lys
TTT
[ENA]
¡û
>W141701526
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1154617
1154542
-
Lys
TTT
[ENA]
¡û
>W141730934
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754547
2754622
+
Lys
TTT
[ENA]
¡û
>W141730965
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2477986
2477911
-
Lys
TTT
[ENA]
¡û
>W141730984
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1600679
1600754
+
Lys
TTT
[ENA]
¡û
>W141731035
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1311457
1311382
-
Lys
TTT
[ENA]
¡û
>C141009963
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
2885084
2885009
-
Lys
TTT
[Ensembl]
¡û
>W1911770676
QXJB01000003
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
272967
273042
+
Lys
TTT
[ENA]
¡û
>W1911770703
QXJB01000021
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
546
471
-
Lys
TTT
[ENA]
¡û
>W1810760540
QPKF01000002
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
487
412
-
Lys
TTT
[ENA]
¡û
>W1810760566
QPKF01000017
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
501
576
+
Lys
TTT
[ENA]
¡û
>W1511403798
JTLL01000008
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
152443
152518
+
Lys
TTT
[ENA]
¡û
>W1511403835
JTLL01000043
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
564
489
-
Lys
TTT
[ENA]
¡û
>W1511686102
LFQN01000039
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
8190
8265
+
Lys
TTT
[ENA]
¡û
>W1511686119
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
455
530
+
Lys
TTT
[ENA]
¡û
>W1511699958
LGIW01000003
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
331
406
+
Lys
TTT
[ENA]
¡û
>C131001792
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
34947
35022
+
Lys
TTT
[Ensembl]
¡û
>C131001839
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
2579468
2579393
-
Lys
TTT
[Ensembl]
¡û
>W1610589616
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
594
519
-
Lys
TTT
[ENA]
¡û
>W1610589644
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
562
487
-
Lys
TTT
[ENA]
¡û
>W1610589693
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18157
18232
+
Lys
TTT
[ENA]
¡û
>W1610589703
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
456
531
+
Lys
TTT
[ENA]
¡û
>W1610739438
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70371
70446
+
Lys
TTT
[ENA]
¡û
>W1610739470
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
538
613
+
Lys
TTT
[ENA]
¡û
>W1610767763
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258269
258344
+
Lys
TTT
[ENA]
¡û
>W1610928323
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
563
638
+
Lys
TTT
[ENA]
¡û
>W1610928374
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
599
524
-
Lys
TTT
[ENA]
¡û
>W1710511239
FMYN01000004
Bacillota
Exiguobacterium enclense [FMYN]
258269
258344
+
Lys
TTT
[ENA]
¡û
>W1710708896
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
594
519
-
Lys
TTT
[ENA]
¡û
>W1710708924
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
562
487
-
Lys
TTT
[ENA]
¡û
>W1710708973
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18157
18232
+
Lys
TTT
[ENA]
¡û
>W1710708983
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
456
531
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK