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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464736 (25 seq.)
>C009466
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
260932
260857
-
Val
TAC
[Ensembl]
¡û
>C009473
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
260290
260215
-
Val
TAC
[Ensembl]
¡û
>WENV181524852
OGHI01001816
[OGHI] metagenome; Human gut stool
6472
6547
+
Val
TAC
[ENA]
¢þ
>W141158014
AXNY01000012
Fusobacteriota
Fusobacterium nucleatum CTI-2 [AXNY]
19873
19798
-
Val
TAC
[ENA]
¡û
>W141158026
AXNY01000017
Fusobacteriota
Fusobacterium nucleatum CTI-2 [AXNY]
19777
19702
-
Val
TAC
[ENA]
¡û
>WENV181877579
OGXD01018616
[OGXD] human gut metagenome; faeces
2
77
+
Val
TAC
[ENA]
¢þ
>WENV170005396
AMCI01003704
[AMCI] gut metagenome; fecal sample from gut
580
655
+
Val
TAC
[ENA]
¢þ
>WENV170005454
AMCI01004732
[AMCI] gut metagenome; fecal sample from gut
521
446
-
Val
TAC
[ENA]
¢þ
>C181058813
CP022122
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F317 [CP022122]
181833
181758
-
Val
TAC
-
¡û
>C181160886
CP028101
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [CP028101]
260931
260856
-
Val
TAC
-
¡û
>C181160893
CP028101
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [CP028101]
260289
260214
-
Val
TAC
-
¡û
>C181161259
CP028109
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [CP028109]
287283
287208
-
Val
TAC
-
¡û
>C181161266
CP028109
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [CP028109]
286641
286566
-
Val
TAC
-
¡û
>W1910194447
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1308596
1308671
+
Val
TAC
[ENA]
¡û
>W1910194466
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1393289
1393364
+
Val
TAC
[ENA]
¡û
>W1910194477
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1394260
1394335
+
Val
TAC
[ENA]
¡û
>W1910194504
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
557263
557188
-
Val
TAC
[ENA]
¡û
>W1910928945
NIRM01000001
Fusobacteriota
Fusobacterium polymorphum [NIRM]
899579
899504
-
Val
TAC
[ENA]
¡û
>C151097847
CP012716
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 KCOM 1322 [CP012716]
384724
384649
-
Val
TAC
-
¡û
>C151097887
CP012717
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum KCOM 1250 [CP012717]
1416522
1416447
-
Val
TAC
-
¡û
>C151097903
CP012717
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum KCOM 1250 [CP012717]
1261468
1261393
-
Val
TAC
-
¡û
>W10119123
ADVK01000055
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
174040
173965
-
Val
TAC
[ENA]
¡û
>W10119130
ADVK01000055
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
173398
173323
-
Val
TAC
[ENA]
¡û
>W11125343
ADVK01000055
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
174040
173965
-
Val
TAC
[ENA]
¡û
>W11125350
ADVK01000055
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
173398
173323
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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