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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464737 (56 seq.)
>W1710883017
LMVH01000001
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
1841880
1841805
-
Gly
GCC
[ENA]
¡û
>C009477
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
259927
259852
-
Gly
GCC
[Ensembl]
¡û
>WENV180550238
OCIZ01059149
[OCIZ] human oral metagenome; human oral
129
54
-
Gly
GCC
[ENA]
¢þ
>WENV180718088
ODGE01082420
[ODGE] human metagenome; G_DNA_Buccal mucosa
130
55
-
Gly
GCC
[ENA]
¢þ
>WENV180723014
ODGM01122485
[ODGM] human metagenome; G_DNA_Palatine Tonsils
130
55
-
Gly
GCC
[ENA]
¢þ
>WENV180746156
ODHM01010726
[ODHM] human metagenome; G_DNA_Buccal mucosa
602
677
+
Gly
GCC
[ENA]
¢þ
>WENV180758500
ODHW01064648
[ODHW] human metagenome; G_DNA_Tongue dorsum
140
65
-
Gly
GCC
[ENA]
¢þ
>WENV180769804
ODIG01169580
[ODIG] human metagenome; G_DNA_Tongue dorsum
141
66
-
Gly
GCC
[ENA]
¢þ
>WENV180769998
ODIG01296026
[ODIG] human metagenome; G_DNA_Tongue dorsum
85
10
-
Gly
GCC
[ENA]
¢þ
>WENV180791303
ODIT01233717
[ODIT] human metagenome; G_DNA_Tongue dorsum
130
55
-
Gly
GCC
[ENA]
¢þ
>W141078917
ATKC01000046
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 [ATKC]
280
355
+
Gly
GCC
[ENA]
¡û
>WENV180808168
ODJI01105545
[ODJI] human metagenome; G_DNA_Tongue dorsum
140
65
-
Gly
GCC
[ENA]
¢þ
>WENV180813915
ODJO01003701
[ODJO] human metagenome; G_DNA_Supragingival plaque
2392
2317
-
Gly
GCC
[ENA]
¢þ
>WENV180820879
ODJR01086239
[ODJR] human metagenome; G_DNA_Tongue dorsum
140
65
-
Gly
GCC
[ENA]
¢þ
>WENV180834366
ODKD01015409
[ODKD] human metagenome; G_DNA_Supragingival plaque
118
43
-
Gly
GCC
[ENA]
¢þ
>WENV180847561
ODKT01107612
[ODKT] human metagenome; G_DNA_Supragingival plaque
389
464
+
Gly
GCC
[ENA]
¢þ
>WENV180847569
ODKT01108447
[ODKT] human metagenome; G_DNA_Supragingival plaque
389
464
+
Gly
GCC
[ENA]
¢þ
>WENV180853570
ODKW01195411
[ODKW] human metagenome; G_DNA_Tongue dorsum
130
55
-
Gly
GCC
[ENA]
¢þ
>WENV180856385
ODKZ01012331
[ODKZ] human metagenome; G_DNA_Tongue dorsum
130
55
-
Gly
GCC
[ENA]
¢þ
>WENV180875353
ODLQ01104069
[ODLQ] human metagenome; G_DNA_Tongue dorsum
168
93
-
Gly
GCC
[ENA]
¢þ
>WENV180877804
ODLV01002730
[ODLV] human metagenome; G_DNA_Tongue dorsum
4135
4060
-
Gly
GCC
[ENA]
¢þ
>WENV180897071
ODNI01006124
[ODNI] human metagenome; G_DNA_Tongue dorsum
257
332
+
Gly
GCC
[ENA]
¢þ
>WENV180933200
ODTQ01045030
[ODTQ] human metagenome; G_DNA_Buccal mucosa
202
127
-
Gly
GCC
[ENA]
¢þ
>WENV180974019
ODUW01042636
[ODUW] human metagenome; G_DNA_Supragingival plaque
254
329
+
Gly
GCC
[ENA]
¢þ
>WENV180974707
ODUX01060880
[ODUX] human metagenome; G_DNA_Buccal mucosa
111
36
-
Gly
GCC
[ENA]
¢þ
>WENV180985757
ODVJ01015502
[ODVJ] human metagenome; G_DNA_Tongue dorsum
258
183
-
Gly
GCC
[ENA]
¢þ
>WENV180989259
ODVL01080194
[ODVL] human metagenome; G_DNA_Tongue dorsum
286
211
-
Gly
GCC
[ENA]
¢þ
>WENV180991437
ODVN01090624
[ODVN] human metagenome; G_DNA_Tongue dorsum
130
55
-
Gly
GCC
[ENA]
¢þ
>WENV181006165
ODWA01002835
[ODWA] human metagenome; G_DNA_Buccal mucosa
247
322
+
Gly
GCC
[ENA]
¢þ
>WENV181020777
ODWV01000263
[ODWV] human metagenome; G_DNA_Tongue dorsum
26489
26414
-
Gly
GCC
[ENA]
¢þ
>WENV181057871
ODYL01001559
[ODYL] human metagenome; G_DNA_Tongue dorsum
1947
2022
+
Gly
GCC
[ENA]
¢þ
>WENV181059388
ODYM01000893
[ODYM] human metagenome; G_DNA_Tongue dorsum
5367
5442
+
Gly
GCC
[ENA]
¢þ
>WENV181085111
OEAX01001682
[OEAX] human metagenome; G_DNA_Tongue dorsum
4562
4637
+
Gly
GCC
[ENA]
¢þ
>WENV181086567
OEAY01001254
[OEAY] human metagenome; G_DNA_Tongue dorsum
1675
1750
+
Gly
GCC
[ENA]
¢þ
>WENV181096475
OEBY01161459
[OEBY] human metagenome; G_DNA_Tongue dorsum
63
138
+
Gly
GCC
[ENA]
¢þ
>WENV181098255
OECA01169175
[OECA] human metagenome; G_DNA_Tongue dorsum
130
55
-
Gly
GCC
[ENA]
¢þ
>WENV181130523
OEFY01019816
[OEFY] human metagenome; G_DNA_Throat
130
55
-
Gly
GCC
[ENA]
¢þ
>WENV181150761
OEHW01006834
[OEHW] human metagenome; G_DNA_Tongue dorsum
4566
4641
+
Gly
GCC
[ENA]
¢þ
>WENV181153491
OEIA01099451
[OEIA] human metagenome; G_DNA_Supragingival plaque
140
65
-
Gly
GCC
[ENA]
¢þ
>WENV181158935
OEIH01019452
[OEIH] human metagenome; G_DNA_Supragingival plaque
170
245
+
Gly
GCC
[ENA]
¢þ
>W141158030
AXNY01000017
Fusobacteriota
Fusobacterium nucleatum CTI-2 [AXNY]
19414
19339
-
Gly
GCC
[ENA]
¡û
>WENV170784904
MDSO01048439
[MDSO] gut metagenome; Stomach gut content
586
661
+
Gly
GCC
[ENA]
¢þ
>C181058820
CP022122
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F317 [CP022122]
181077
181002
-
Gly
GCC
-
¡û
>C181104080
CP024700
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1263 [CP024700]
285690
285615
-
Gly
GCC
-
¡û
>C181104261
CP024704
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2555 [CP024704]
323333
323258
-
Gly
GCC
-
¡û
>C181104840
CP024731
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1262 [CP024731]
2066666
2066741
+
Gly
GCC
-
¡û
>C181160897
CP028101
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [CP028101]
259926
259851
-
Gly
GCC
-
¡û
>C181161270
CP028109
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [CP028109]
286278
286203
-
Gly
GCC
-
¡û
>C151097851
CP012716
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 KCOM 1322 [CP012716]
384361
384286
-
Gly
GCC
-
¡û
>C151097891
CP012717
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum KCOM 1250 [CP012717]
1416159
1416084
-
Gly
GCC
-
¡û
>W10113563
ADGG01000001
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
39261
39186
-
Gly
GCC
[ENA]
¡û
>W10119134
ADVK01000055
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
173035
172960
-
Gly
GCC
[ENA]
¡û
>W11116852
ADGG01000001
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
39261
39186
-
Gly
GCC
[ENA]
¡û
>W11125354
ADVK01000055
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
173035
172960
-
Gly
GCC
[ENA]
¡û
>W121007434
AGAD01000261
Fusobacteriota
Fusobacterium sp. oral taxon 370 oral taxon 370 str. F0437 [AGAD]
105
180
+
Gly
GCC
[ENA]
¡û
>W1610744943
LMVH01000001
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
1841880
1841805
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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