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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464758 (54 seq.)
>W1710863148
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
478719
478793
+
Thr
GGT
[ENA]
¡û
>W1710863150
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
103276
103202
-
Thr
GGT
[ENA]
¡û
>W1710892689
LNDZ01000032
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
80117
80191
+
Thr
GGT
[ENA]
¡û
>W1711430701
MIJG01000001
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1053426
1053352
-
Thr
GGT
[ENA]
¡û
>C171088484
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
4333189
4333263
+
Thr
GGT
-
¡û
>C171088518
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
4063975
4063901
-
Thr
GGT
-
¡û
>C171094259
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
19087
19013
-
Thr
GGT
-
¡û
>W131046078
AMSB01000011
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
306
232
-
Thr
GGT
[ENA]
¡û
>W131050736
AMXA01000031
Betaproteobacteria
Thauera sp. 28 [AMXA]
5756
5830
+
Thr
GGT
[ENA]
¡û
>W131050819
AMXC01000008
Betaproteobacteria
Thauera sp. 63 [AMXC]
41518
41592
+
Thr
GGT
[ENA]
¡û
>W131050900
AMXE01000001
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
97188
97114
-
Thr
GGT
[ENA]
¡û
>WENV180019258
FTBS01000136
[FTBS] metagenome; soil
1119
1193
+
Thr
GGT
[ENA]
¢þ
>WENV180035097
FTKT01001686
[FTKT] metagenome; soil
1669
1595
-
Thr
GGT
[ENA]
¢þ
>W141003844
AEEC02000036
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
55122
55196
+
Thr
GGT
[ENA]
¡û
>WENV180311554
OBJT01374691
[OBJT] soil metagenome; soil
132
206
+
Thr
GGT
[ENA]
¢þ
>W141078544
ATJV01000103
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
146138
146212
+
Thr
GGT
[ENA]
¡û
>WENV181221663
OFCW01000407
[OFCW] microbial mat metagenome; Microbial Mat
8530
8604
+
Thr
GGT
[ENA]
¢þ
>WENV181643735
OGNI01023804
[OGNI] metagenome; Human gut stool
281
207
-
Thr
GGT
[ENA]
¢þ
>WENV181902646
OGXW01056992
[OGXW] human gut metagenome; faeces
818
744
-
Thr
GGT
[ENA]
¢þ
>W141223408
BADF01000432
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
325
399
+
Thr
GGT
[ENA]
¡û
>W141223506
BADI01000794
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
1738
1664
-
Thr
GGT
[ENA]
¡û
>W141241316
CAHF01000005
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
149
75
-
Thr
GGT
[ENA]
¡û
>W141258916
CBXX010000031
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
57969
58043
+
Thr
GGT
[ENA]
¡û
>WENV183737175
PJUD01001009
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1181
1255
+
Thr
GGT
[ENA]
¢þ
>WENV183737249
PJUD01001806
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
281
207
-
Thr
GGT
[ENA]
¢þ
>WENV183739005
PJUE01000861
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
5088
5162
+
Thr
GGT
[ENA]
¢þ
>WENV183740164
PJUF01000554
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
81
7
-
Thr
GGT
[ENA]
¢þ
>WENV183740413
PJUF01001740
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
721
647
-
Thr
GGT
[ENA]
¢þ
>WENV183740633
PJUF01004933
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3
77
+
Thr
GGT
[ENA]
¢þ
>WENV170193277
CEPH01045455
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
56
130
+
Thr
GGT
[ENA]
¢þ
>WENV170573241
FLYK01001452
[FLYK] hot springs metagenome; Sediment
148
222
+
Thr
GGT
[ENA]
¢þ
>WENV170574351
FLYM01028157
[FLYM] hot springs metagenome; Sediment
501
427
-
Thr
GGT
[ENA]
¢þ
>WENV170650769
JRYE01017613
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
668
742
+
Thr
GGT
[ENA]
¢þ
>C191156612
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
149461
149535
+
Thr
GGT
-
¡û
>W141821362
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
4695897
4695971
+
Thr
GGT
[ENA]
¡û
>W141821374
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
4383169
4383095
-
Thr
GGT
[ENA]
¡û
>W1910548749
FZOT01000001
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
246
172
-
Thr
GGT
[ENA]
¡û
>W1910548779
FZOT01000008
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
81294
81220
-
Thr
GGT
[ENA]
¡û
>W1910578313
JWJC01000017
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
312
238
-
Thr
GGT
[ENA]
¡û
>W1911802791
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3259864
3259790
-
Thr
GGT
[ENA]
¡û
>W1810195602
PKRR01000003
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
97676
97602
-
Thr
GGT
[ENA]
¡û
>W1810330135
PUIP01000009
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
264331
264405
+
Thr
GGT
[ENA]
¡û
>W1810330140
PUIP01000009
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
274
200
-
Thr
GGT
[ENA]
¡û
>W1511683846
LFLT01000055
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
155
81
-
Thr
GGT
[ENA]
¡û
>W1511683888
LFLU01000009
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
202765
202839
+
Thr
GGT
[ENA]
¡û
>C161060432
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
127668
127742
+
Thr
GGT
[Ensembl]
¡û
>W121086401
AKJW01000102
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
210
136
-
Thr
GGT
[ENA]
¡û
>W1610725494
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
478719
478793
+
Thr
GGT
[ENA]
¡û
>W1610725496
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
103276
103202
-
Thr
GGT
[ENA]
¡û
>W1610752955
LNDZ01000032
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
80117
80191
+
Thr
GGT
[ENA]
¡û
>W1710561493
FOOF01000002
Betaproteobacteria
Duganella sp. CF458 [FOOF]
54150
54224
+
Thr
GGT
[ENA]
¡û
>W1710561501
FOOF01000003
Betaproteobacteria
Duganella sp. CF458 [FOOF]
142266
142192
-
Thr
GGT
[ENA]
¡û
>W1710641504
JRYB01000001
Betaproteobacteria
Massilia timonae [JRYB]
1611675
1611749
+
Thr
GGT
[ENA]
¡û
>W1710641565
JRYB01000001
Betaproteobacteria
Massilia timonae [JRYB]
1346400
1346326
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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