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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464771 (64 seq.)
>W1712081289
NHNK01000006
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
661
586
-
Asn
GTT
[ENA]
¡û
>W1712081293
NHNK01000006
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
251
176
-
Asn
GTT
[ENA]
¡û
>C013014
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4268107
4268032
-
Asn
GTT
[Ensembl]
¡û
>C013018
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4267727
4267652
-
Asn
GTT
[Ensembl]
¡û
>WENV180042120
LNFX01000011
[LNFX] marine sediment metagenome; antarctic beach sand mud
2052
2127
+
Asn
GTT
[ENA]
¢þ
>W141191383
AYOZ01000007
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
742
667
-
Asn
GTT
[ENA]
¡û
>W141191387
AYOZ01000007
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
359
284
-
Asn
GTT
[ENA]
¡û
>W141284666
JAMB01000001
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
736365
736440
+
Asn
GTT
[ENA]
¡û
>W141284685
JAMB01000010
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
36
111
+
Asn
GTT
[ENA]
¡û
>W141284689
JAMB01000010
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
418
493
+
Asn
GTT
[ENA]
¡û
>WENV183637286
OPGP01010840
[OPGP] human gut metagenome; Material from the ethmoid
258
333
+
Asn
GTT
[ENA]
¢þ
>WENV183637290
OPGP01010840
[OPGP] human gut metagenome; Material from the ethmoid
644
719
+
Asn
GTT
[ENA]
¢þ
>C191039812
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3290294
3290219
-
Asn
GTT
-
¡û
>C191039816
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3289914
3289839
-
Asn
GTT
-
¡û
>W09106487
AAVH01000052
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1982
1907
-
Asn
GTT
[ENA]
¡û
>W09106491
AAVH01000052
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1602
1527
-
Asn
GTT
[ENA]
¡û
>W1910584824
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
738
663
-
Asn
GTT
[ENA]
¡û
>W1910584828
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
351
276
-
Asn
GTT
[ENA]
¡û
>W1910914875
NHTT01000007
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
211882
211957
+
Asn
GTT
[ENA]
¡û
>W1910914879
NHTT01000007
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
212269
212344
+
Asn
GTT
[ENA]
¡û
>W1810606218
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
160638
160713
+
Asn
GTT
[ENA]
¡û
>W1810606222
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
161027
161102
+
Asn
GTT
[ENA]
¡û
>W1810625245
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
58359
58434
+
Asn
GTT
[ENA]
¡û
>W1810625249
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
58746
58821
+
Asn
GTT
[ENA]
¡û
>W1810625253
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
59133
59208
+
Asn
GTT
[ENA]
¡û
>W1810625257
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
59520
59595
+
Asn
GTT
[ENA]
¡û
>W1810676270
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
79092
79167
+
Asn
GTT
[ENA]
¡û
>W1810676274
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
79472
79547
+
Asn
GTT
[ENA]
¡û
>W1810720351
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
55131
55056
-
Asn
GTT
[ENA]
¡û
>W1810720355
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
54750
54675
-
Asn
GTT
[ENA]
¡û
>W1810721695
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
132518
132443
-
Asn
GTT
[ENA]
¡û
>W1810721699
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
132134
132059
-
Asn
GTT
[ENA]
¡û
>W1810759714
QPJQ01000024
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
34339
34264
-
Asn
GTT
[ENA]
¡û
>W1810759718
QPJQ01000024
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
33959
33884
-
Asn
GTT
[ENA]
¡û
>W1810885371
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
14370
14445
+
Asn
GTT
[ENA]
¡û
>W1810885375
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
14754
14829
+
Asn
GTT
[ENA]
¡û
>C11114982
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
634734
634809
+
Asn
GTT
[Ensembl]
¡û
>C11114986
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
635117
635192
+
Asn
GTT
[Ensembl]
¡û
>W1511518557
JXYC01000076
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
2
77
+
Asn
GTT
[ENA]
¡û
>WENV058900
AACY023346332
Marine microbial communities from Global Ocean Sampling (GOS)
540
463
-
Asn
GTT
[ENA]
>W1610503731
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44363
44438
+
Asn
GTT
[ENA]
¡û
>W1610503735
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44745
44820
+
Asn
GTT
[ENA]
¡û
>W1610504030
FLOE01000020
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
74168
74243
+
Asn
GTT
[ENA]
¡û
>W1610504034
FLOE01000020
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
74550
74625
+
Asn
GTT
[ENA]
¡û
>W1610540026
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70412
70337
-
Asn
GTT
[ENA]
¡û
>W1610540030
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70030
69955
-
Asn
GTT
[ENA]
¡û
>W1610540109
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
71117
71042
-
Asn
GTT
[ENA]
¡û
>W1610540113
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70705
70630
-
Asn
GTT
[ENA]
¡û
>W1610540117
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70293
70218
-
Asn
GTT
[ENA]
¡û
>W1610540202
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
71229
71154
-
Asn
GTT
[ENA]
¡û
>W1610540206
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70817
70742
-
Asn
GTT
[ENA]
¡û
>W1610540210
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70405
70330
-
Asn
GTT
[ENA]
¡û
>W1710496560
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44363
44438
+
Asn
GTT
[ENA]
¡û
>W1710496564
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44745
44820
+
Asn
GTT
[ENA]
¡û
>W1710583959
FQVF01000011
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
585
510
-
Asn
GTT
[ENA]
¡û
>W1710583964
FQVF01000011
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
94
19
-
Asn
GTT
[ENA]
¡û
>W1710643047
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70412
70337
-
Asn
GTT
[ENA]
¡û
>W1710643051
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70030
69955
-
Asn
GTT
[ENA]
¡û
>W1710643130
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
71117
71042
-
Asn
GTT
[ENA]
¡û
>W1710643134
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70705
70630
-
Asn
GTT
[ENA]
¡û
>W1710643138
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
70293
70218
-
Asn
GTT
[ENA]
¡û
>W1710643223
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
71229
71154
-
Asn
GTT
[ENA]
¡û
>W1710643227
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70817
70742
-
Asn
GTT
[ENA]
¡û
>W1710643231
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70405
70330
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK