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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464773 (99 seq.)
>W1712081297
NHNK01000011
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
99285
99360
+
Thr
TGT
[ENA]
¡û
>W1712081298
NHNK01000011
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
99407
99482
+
Thr
TGT
[ENA]
¡û
>W1712081299
NHNK01000011
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
99550
99625
+
Thr
TGT
[ENA]
¡û
>C013033
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2931934
2931859
-
Thr
TGT
[Ensembl]
¡û
>C013034
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2931787
2931712
-
Thr
TGT
[Ensembl]
¡û
>C013035
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2931671
2931596
-
Thr
TGT
[Ensembl]
¡û
>C013036
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2931550
2931475
-
Thr
TGT
[Ensembl]
¡û
>WENV180042145
LNFX01000660
[LNFX] marine sediment metagenome; antarctic beach sand mud
320
245
-
Thr
TGT
[ENA]
¢þ
>W141191391
AYOZ01000008
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
173
98
-
Thr
TGT
[ENA]
¡û
>W141284681
JAMB01000009
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
161075
161150
+
Thr
TGT
[ENA]
¡û
>W141284682
JAMB01000009
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
161222
161297
+
Thr
TGT
[ENA]
¡û
>W141284683
JAMB01000009
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
161343
161418
+
Thr
TGT
[ENA]
¡û
>W141284684
JAMB01000009
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
161460
161535
+
Thr
TGT
[ENA]
¡û
>W09106466
AAVH01000027
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
16170
16095
-
Thr
TGT
[ENA]
¡û
>W09106467
AAVH01000027
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
16023
15948
-
Thr
TGT
[ENA]
¡û
>W09106468
AAVH01000027
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
15907
15832
-
Thr
TGT
[ENA]
¡û
>W09106469
AAVH01000027
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
15786
15711
-
Thr
TGT
[ENA]
¡û
>C191039780
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
1624583
1624658
+
Thr
TGT
-
¡û
>C191039781
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
1624728
1624803
+
Thr
TGT
-
¡û
>C191039782
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
1624845
1624920
+
Thr
TGT
-
¡û
>C191039783
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
1624968
1625043
+
Thr
TGT
-
¡û
>W1910584806
JYBL01000001
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
528
453
-
Thr
TGT
[ENA]
¡û
>W1910584807
JYBL01000001
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
383
308
-
Thr
TGT
[ENA]
¡û
>W1910584808
JYBL01000001
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
267
192
-
Thr
TGT
[ENA]
¡û
>W1910584809
JYBL01000001
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
146
71
-
Thr
TGT
[ENA]
¡û
>W1910914861
NHTT01000003
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
403722
403797
+
Thr
TGT
[ENA]
¡û
>W1910914862
NHTT01000003
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
403867
403942
+
Thr
TGT
[ENA]
¡û
>W1910914909
NHTT01000048
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
6
81
+
Thr
TGT
[ENA]
¡û
>W1910914910
NHTT01000048
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
127
202
+
Thr
TGT
[ENA]
¡û
>W1810606185
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
267491
267566
+
Thr
TGT
[ENA]
¡û
>W1810606186
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
267629
267704
+
Thr
TGT
[ENA]
¡û
>W1810606187
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
267746
267821
+
Thr
TGT
[ENA]
¡û
>W1810606188
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
267867
267942
+
Thr
TGT
[ENA]
¡û
>W1810606189
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
268005
268080
+
Thr
TGT
[ENA]
¡û
>W1810606190
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
268126
268201
+
Thr
TGT
[ENA]
¡û
>W1810606191
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
268247
268322
+
Thr
TGT
[ENA]
¡û
>W1810606192
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
268368
268443
+
Thr
TGT
[ENA]
¡û
>W1810606193
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
268489
268564
+
Thr
TGT
[ENA]
¡û
>W1810606194
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
268610
268685
+
Thr
TGT
[ENA]
¡û
>W1810606195
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
268731
268806
+
Thr
TGT
[ENA]
¡û
>W1810625229
QHJF01000015
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
47327
47402
+
Thr
TGT
[ENA]
¡û
>W1810625230
QHJF01000015
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
47466
47541
+
Thr
TGT
[ENA]
¡û
>W1810625231
QHJF01000015
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
47582
47657
+
Thr
TGT
[ENA]
¡û
>W1810625232
QHJF01000015
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
47698
47773
+
Thr
TGT
[ENA]
¡û
>W1810625233
QHJF01000015
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
47819
47894
+
Thr
TGT
[ENA]
¡û
>W1810625234
QHJF01000015
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
47940
48015
+
Thr
TGT
[ENA]
¡û
>W1810676233
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
575516
575591
+
Thr
TGT
[ENA]
¡û
>W1810676234
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
575661
575736
+
Thr
TGT
[ENA]
¡û
>W1810676235
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
575778
575853
+
Thr
TGT
[ENA]
¡û
>W1810676236
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
575900
575975
+
Thr
TGT
[ENA]
¡û
>W1810679696
QKRA01000019
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
624
549
-
Thr
TGT
[ENA]
¡û
>W1810679697
QKRA01000019
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
513
438
-
Thr
TGT
[ENA]
¡û
>W1810679698
QKRA01000019
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
417
342
-
Thr
TGT
[ENA]
¡û
>W1810679699
QKRA01000019
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
300
225
-
Thr
TGT
[ENA]
¡û
>W1810720336
QNRF01000007
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
162994
163069
+
Thr
TGT
[ENA]
¡û
>W1810720337
QNRF01000007
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
163129
163204
+
Thr
TGT
[ENA]
¡û
>W1810720338
QNRF01000007
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
163248
163323
+
Thr
TGT
[ENA]
¡û
>W1810720339
QNRF01000007
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
163374
163449
+
Thr
TGT
[ENA]
¡û
>W1810721678
QNSE01000004
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
345939
346014
+
Thr
TGT
[ENA]
¡û
>W1810721679
QNSE01000004
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
346085
346160
+
Thr
TGT
[ENA]
¡û
>W1810721680
QNSE01000004
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
346203
346278
+
Thr
TGT
[ENA]
¡û
>W1810721681
QNSE01000004
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
346324
346399
+
Thr
TGT
[ENA]
¡û
>W1810759687
QPJQ01000006
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
26232
26157
-
Thr
TGT
[ENA]
¡û
>W1810759688
QPJQ01000006
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
26088
26013
-
Thr
TGT
[ENA]
¡û
>W1810759689
QPJQ01000006
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
25971
25896
-
Thr
TGT
[ENA]
¡û
>W1810759690
QPJQ01000006
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
25848
25773
-
Thr
TGT
[ENA]
¡û
>W1810885362
QUNG01000012
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
94406
94481
+
Thr
TGT
[ENA]
¡û
>W1810885363
QUNG01000012
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
94547
94622
+
Thr
TGT
[ENA]
¡û
>W1810885364
QUNG01000012
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
94676
94751
+
Thr
TGT
[ENA]
¡û
>W1810885365
QUNG01000012
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
94795
94870
+
Thr
TGT
[ENA]
¡û
>C11114999
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1591546
1591621
+
Thr
TGT
[Ensembl]
¡û
>C11115000
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1591682
1591757
+
Thr
TGT
[Ensembl]
¡û
>C11115001
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1591801
1591876
+
Thr
TGT
[Ensembl]
¡û
>C11115002
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1591924
1591999
+
Thr
TGT
[Ensembl]
¡û
>W1610503691
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403311
403386
+
Thr
TGT
[ENA]
¡û
>W1610503692
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403438
403513
+
Thr
TGT
[ENA]
¡û
>W1610503693
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403556
403631
+
Thr
TGT
[ENA]
¡û
>W1610503694
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403677
403752
+
Thr
TGT
[ENA]
¡û
>W1610504019
FLOE01000019
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
1273
1198
-
Thr
TGT
[ENA]
¡û
>W1610504020
FLOE01000019
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
1146
1071
-
Thr
TGT
[ENA]
¡û
>W1610504021
FLOE01000019
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
1028
953
-
Thr
TGT
[ENA]
¡û
>W1610504022
FLOE01000019
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
907
832
-
Thr
TGT
[ENA]
¡û
>W1610540007
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219702
219627
-
Thr
TGT
[ENA]
¡û
>W1610540008
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219567
219492
-
Thr
TGT
[ENA]
¡û
>W1610540009
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219448
219373
-
Thr
TGT
[ENA]
¡û
>W1610540010
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219328
219253
-
Thr
TGT
[ENA]
¡û
>W1710496520
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403311
403386
+
Thr
TGT
[ENA]
¡û
>W1710496521
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403438
403513
+
Thr
TGT
[ENA]
¡û
>W1710496522
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403556
403631
+
Thr
TGT
[ENA]
¡û
>W1710496523
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
403677
403752
+
Thr
TGT
[ENA]
¡û
>W1710583969
FQVF01000014
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
143468
143543
+
Thr
TGT
[ENA]
¡û
>W1710583970
FQVF01000014
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
143584
143659
+
Thr
TGT
[ENA]
¡û
>W1710583971
FQVF01000014
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
143704
143779
+
Thr
TGT
[ENA]
¡û
>W1710583972
FQVF01000014
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
143820
143895
+
Thr
TGT
[ENA]
¡û
>W1710583974
FQVF01000014
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
144083
144158
+
Thr
TGT
[ENA]
¡û
>W1710643028
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219702
219627
-
Thr
TGT
[ENA]
¡û
>W1710643029
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219567
219492
-
Thr
TGT
[ENA]
¡û
>W1710643030
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219448
219373
-
Thr
TGT
[ENA]
¡û
>W1710643031
JSEE01000001
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
219328
219253
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK