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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464806 (85 seq.)
>W1710860834
LMDE01000012
Actinomycetota
Nocardioides sp. Root122 [LMDE]
121115
121040
-
Lys
CTT
[ENA]
¡û
>W1710880676
LMSM01000009
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
227276
227201
-
Lys
CTT
[ENA]
¡û
>W1710880682
LMSN01000001
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
554979
555052
+
Lys
CTT
[ENA]
¡û
>W1710881051
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
796668
796743
+
Lys
CTT
[ENA]
¡û
>W1711126722
LUPF01000078
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
3730
3657
-
Lys
CTT
[ENA]
¡û
>W1711126774
LUPH01000086
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
50116
50189
+
Lys
CTT
[ENA]
¡û
>W1711126804
LUPI01000013
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
50294
50367
+
Lys
CTT
[ENA]
¡û
>W1711126856
LUPJ01000108
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
1925
1998
+
Lys
CTT
[ENA]
¡û
>W1711126900
LUPK01000045
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
50516
50589
+
Lys
CTT
[ENA]
¡û
>W1711126929
LUPL01000017
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
581
508
-
Lys
CTT
[ENA]
¡û
>W1711127058
LUPO01000026
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
50516
50589
+
Lys
CTT
[ENA]
¡û
>W1711127092
LUPP01000033
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
634
561
-
Lys
CTT
[ENA]
¡û
>W1711127152
LUPQ01000156
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
656
583
-
Lys
CTT
[ENA]
¡û
>W1712084152
NHQT01000031
Actinomycetota
Nocardioides sp. XL1 [NHQT]
43620
43545
-
Lys
CTT
[ENA]
¡û
>W131229369
AUGT01000005
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
190811
190886
+
Lys
CTT
[ENA]
¡û
>W131229445
AUGU01000015
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
99284
99209
-
Lys
CTT
[ENA]
¡û
>W131229446
AUGU01000015
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
99068
98993
-
Lys
CTT
[ENA]
¡û
>C015217
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
1410451
1410376
-
Lys
CTT
[Ensembl]
¡û
>WENV180000060
CZKB01000004
[CZKB] metagenome; liquid mineral medium
30302
30375
+
Lys
CTT
[ENA]
¢þ
>WENV180019323
FTBU01000940
[FTBU] metagenome; soil
1928
2003
+
Lys
CTT
[ENA]
¢þ
>WENV170176746
CEOS01118812
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
63
136
+
Lys
CTT
[ENA]
¢þ
>WENV170229577
CEQG01135243
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
617
544
-
Lys
CTT
[ENA]
¢þ
>WENV170552022
CXWJ01035030
[CXWJ] wastewater metagenome; activated sludge
622
695
+
Lys
CTT
[ENA]
¢þ
>WENV170727518
LULE01000308
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
34171
34244
+
Lys
CTT
[ENA]
¢þ
>WENV170727927
LULE01004669
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
951
878
-
Lys
CTT
[ENA]
¢þ
>WENV170728645
LULF01000032
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
50516
50589
+
Lys
CTT
[ENA]
¢þ
>WENV170730299
LULG01030245
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
407
334
-
Lys
CTT
[ENA]
¢þ
>WENV170731128
LULH01028896
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
447
374
-
Lys
CTT
[ENA]
¢þ
>WENV170731858
LULI01005398
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
278
205
-
Lys
CTT
[ENA]
¢þ
>WENV170733926
LULK01000408
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
19794
19867
+
Lys
CTT
[ENA]
¢þ
>WENV170734758
LULK01018189
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
543
470
-
Lys
CTT
[ENA]
¢þ
>WENV170735125
LULL01000045
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
50516
50589
+
Lys
CTT
[ENA]
¢þ
>WENV170737070
LULN01001786
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
1925
1998
+
Lys
CTT
[ENA]
¢þ
>WENV170737331
LULN01015169
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
604
531
-
Lys
CTT
[ENA]
¢þ
>WENV170737454
LULO01000155
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
50294
50367
+
Lys
CTT
[ENA]
¢þ
>WENV170739289
LULQ01000129
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
50116
50189
+
Lys
CTT
[ENA]
¢þ
>WENV170742277
LULU01008446
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
803
876
+
Lys
CTT
[ENA]
¢þ
>WENV170743464
LULW01000127
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
3730
3657
-
Lys
CTT
[ENA]
¢þ
>WENV170743929
LULW01009525
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
549
476
-
Lys
CTT
[ENA]
¢þ
>WENV170746234
LULZ01015760
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
165
92
-
Lys
CTT
[ENA]
¢þ
>WENV170758843
LUMS01000047
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
32433
32506
+
Lys
CTT
[ENA]
¢þ
>WENV170760546
LUMT01023718
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
523
450
-
Lys
CTT
[ENA]
¢þ
>WENV170760762
LUMU01000064
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
656
583
-
Lys
CTT
[ENA]
¢þ
>WENV170761148
LUMU01013325
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
786
859
+
Lys
CTT
[ENA]
¢þ
>WENV170761864
LUMW01000021
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
50320
50393
+
Lys
CTT
[ENA]
¢þ
>C191104212
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
1218140
1218067
-
Lys
CTT
-
¡û
>C191158852
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
3599456
3599382
-
Lys
CTT
-
¡û
>C191159444
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
406768
406841
+
Lys
CTT
-
¡û
>C191159941
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
1050688
1050615
-
Lys
CTT
-
¡û
>C191182502
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
927692
927619
-
Lys
CTT
-
¡û
>C191186683
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
2305060
2305133
+
Lys
CTT
-
¡û
>C191186984
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
1115518
1115592
+
Lys
CTT
-
¡û
>W141564520
JIAV01000016
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
11232
11307
+
Lys
CTT
[ENA]
¡û
>W09103266
AAJB01000020
Actinomycetota
Nocardioides sp. JS614 [AAJB]
28978
28903
-
Lys
CTT
[ENA]
¡û
>W1910181524
BJMC01000007
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
2703
2630
-
Lys
CTT
[ENA]
¡û
>W1911672132
QGDD01000009
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
65608
65535
-
Lys
CTT
[ENA]
¡û
>W1911823563
QZVR01000007
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
42770
42845
+
Lys
CTT
[ENA]
¡û
>W1810462687
PZYY01000018
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
10437
10510
+
Lys
CTT
[ENA]
¡û
>W1810462706
PZYZ01000001
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
680858
680783
-
Lys
CTT
[ENA]
¡û
>W1810487181
QAYJ01000001
Actinomycetota
Nocardioides sp. CF204 [QAYJ]
2136071
2135996
-
Lys
CTT
[ENA]
¡û
>W1810539926
QDGZ01000010
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
39510
39583
+
Lys
CTT
[ENA]
¡û
>W1810577865
QEOO01000015
Actinomycetota
Nocardioides speluncae YIM ART13 [QEOO]
113476
113549
+
Lys
CTT
[ENA]
¡û
>W1810626182
QHKX01000002
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
566131
566205
+
Lys
CTT
[ENA]
¡û
>W1810626266
QHKZ01000002
Actinomycetota
Nocardioides daejeonensis MJ31 [QHKZ]
398900
398826
-
Lys
CTT
[ENA]
¡û
>C151061359
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
1703114
1703039
-
Lys
CTT
[Ensembl]
¡û
>W1610049477
BBEZ01000588
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
1517
1442
-
Lys
CTT
[ENA]
¡û
>W1610051413
BBGV01001412
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
197
272
+
Lys
CTT
[ENA]
¡û
>W1610723180
LMDE01000012
Actinomycetota
Nocardioides sp. Root122 [LMDE]
121115
121040
-
Lys
CTT
[ENA]
¡û
>W1610743022
LMSM01000009
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
227276
227201
-
Lys
CTT
[ENA]
¡û
>W1610743028
LMSN01000001
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
554979
555052
+
Lys
CTT
[ENA]
¡û
>W1610743397
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
796668
796743
+
Lys
CTT
[ENA]
¡û
>W1610937836
LUPF01000078
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
3730
3657
-
Lys
CTT
[ENA]
¡û
>W1610937888
LUPH01000086
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
50116
50189
+
Lys
CTT
[ENA]
¡û
>W1610937918
LUPI01000013
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
50294
50367
+
Lys
CTT
[ENA]
¡û
>W1610937970
LUPJ01000108
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
1925
1998
+
Lys
CTT
[ENA]
¡û
>W1610938014
LUPK01000045
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
50516
50589
+
Lys
CTT
[ENA]
¡û
>W1610938043
LUPL01000017
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
581
508
-
Lys
CTT
[ENA]
¡û
>W1610938172
LUPO01000026
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
50516
50589
+
Lys
CTT
[ENA]
¡û
>W1610938206
LUPP01000033
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
634
561
-
Lys
CTT
[ENA]
¡û
>W1610938266
LUPQ01000156
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
656
583
-
Lys
CTT
[ENA]
¡û
>W1710045876
BBEZ01000588
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
1517
1442
-
Lys
CTT
[ENA]
¡û
>W1710047791
BBGV01001412
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
197
272
+
Lys
CTT
[ENA]
¡û
>W1710534269
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
98724
98797
+
Lys
CTT
[ENA]
¡û
>W1710557504
FOLB01000012
Actinomycetota
Nocardioides terrae [FOLB]
64146
64219
+
Lys
CTT
[ENA]
¡û
>W1710569407
FOUK01000002
Actinomycetota
Pimelobacter simplex [FOUK]
874301
874376
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK