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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464808 (51 seq.)
>W1711333324
MBPP01000006
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
138615
138690
+
Lys
TTT
[ENA]
¡û
>W1711333325
MBPP01000006
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
138763
138838
+
Lys
TTT
[ENA]
¡û
>W1711388956
MEIY01000001
Gammaproteobacteria
Marinobacter sp. X15-166B [MEIY]
2741100
2741175
+
Lys
TTT
[ENA]
¡û
>W1711388957
MEIY01000001
Gammaproteobacteria
Marinobacter sp. X15-166B [MEIY]
2741259
2741334
+
Lys
TTT
[ENA]
¡û
>C171118708
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
2869910
2869985
+
Lys
TTT
-
¡û
>C171118709
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
2870308
2870383
+
Lys
TTT
-
¡û
>W131111410
APLQ01000014
Gammaproteobacteria
Marinobacter nanhaiticus D15-8W [APLQ]
2112035
2111960
-
Lys
TTT
[ENA]
¡û
>W131111411
APLQ01000014
Gammaproteobacteria
Marinobacter nanhaiticus D15-8W [APLQ]
2111901
2111826
-
Lys
TTT
[ENA]
¡û
>W131166729
ARCR01000038
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
18847
18772
-
Lys
TTT
[ENA]
¡û
>W131166730
ARCR01000038
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
18611
18536
-
Lys
TTT
[ENA]
¡û
>C012945
CP000514
Gammaproteobacteria
Marinobacter nauticus VT8 [CP000514]
1387007
1387082
+
Lys
TTT
[Ensembl]
¡û
>w023561
AAXY01000028
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
1599
1527
-
Lys
TTT
[ENA]
¡û
>w023560
AAXY01000028
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
1837
1765
-
Lys
TTT
[ENA]
¡û
>WENV180296149
OBJA01000018
[OBJA] soil metagenome; sediment, water from around vicinity
43617
43542
-
Lys
TTT
[ENA]
¢þ
>WENV181122659
OEFM01091974
[OEFM] marine metagenome; ENVO:00000569 for seawater
103
28
-
Lys
TTT
[ENA]
¢þ
>WENV183704071
PDWI01000018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11007
10932
-
Lys
TTT
[ENA]
¢þ
>WENV183704072
PDWI01000018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10871
10796
-
Lys
TTT
[ENA]
¢þ
>WENV183704773
PDWI01000623
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
39418
39343
-
Lys
TTT
[ENA]
¢þ
>WENV183716513
PDWJ01000032
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11007
10932
-
Lys
TTT
[ENA]
¢þ
>WENV183716514
PDWJ01000032
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
10871
10796
-
Lys
TTT
[ENA]
¢þ
>WENV183717654
PDWJ01001333
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
17804
17879
+
Lys
TTT
[ENA]
¢þ
>WENV183749813
PPFU01215790
[PPFU] hypolithon metagenome; Antarctic Hypolithon
189
114
-
Lys
TTT
[ENA]
¢þ
>WENV170015557
AZIH01004921
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
1555
1480
-
Lys
TTT
[ENA]
¢þ
>WENV170674092
LAZR01043591
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
75
1
-
Lys
TTT
[ENA]
¢þ
>C191155301
CP037934
Gammaproteobacteria
Marinobacter sp. JH2 [CP037934]
1512635
1512560
-
Lys
TTT
-
¡û
>C191155302
CP037934
Gammaproteobacteria
Marinobacter sp. JH2 [CP037934]
1512499
1512424
-
Lys
TTT
-
¡û
>W09104004
AALG01000033
Gammaproteobacteria
Marinobacter nauticus VT8 [AALG]
22092
22167
+
Lys
TTT
[ENA]
¡û
>W1910923684
NIHC01000004
Gammaproteobacteria
Marinobacter salexigens HJR7 [NIHC]
440633
440708
+
Lys
TTT
[ENA]
¡û
>W1910923685
NIHC01000004
Gammaproteobacteria
Marinobacter salexigens HJR7 [NIHC]
440780
440855
+
Lys
TTT
[ENA]
¡û
>W1910923727
NIHD01000003
Gammaproteobacteria
Marinobacter aromaticivorans D15-8P [NIHD]
437781
437856
+
Lys
TTT
[ENA]
¡û
>W1910923728
NIHD01000003
Gammaproteobacteria
Marinobacter aromaticivorans D15-8P [NIHD]
437929
438004
+
Lys
TTT
[ENA]
¡û
>W1911424807
NXGV01000001
Gammaproteobacteria
Marinobacter sp. ANT_B65 [NXGV]
1335580
1335655
+
Lys
TTT
[ENA]
¡û
>W1911424808
NXGV01000001
Gammaproteobacteria
Marinobacter sp. ANT_B65 [NXGV]
1335728
1335803
+
Lys
TTT
[ENA]
¡û
>W1810057906
PDJA01000001
Gammaproteobacteria
Marinobacter sp. LV10MA510-1 [PDJA]
1398569
1398494
-
Lys
TTT
[ENA]
¡û
>W1810057907
PDJA01000001
Gammaproteobacteria
Marinobacter sp. LV10MA510-1 [PDJA]
1398331
1398256
-
Lys
TTT
[ENA]
¡û
>W1810058544
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
4257816
4257741
-
Lys
TTT
[ENA]
¡û
>W1810058545
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
4257578
4257503
-
Lys
TTT
[ENA]
¡û
>W1810173507
PJNC01000001
Gammaproteobacteria
Marinobacter sp. LV10R510-8 [PJNC]
2853007
2853082
+
Lys
TTT
[ENA]
¡û
>W1810595478
QGEH01000001
Gammaproteobacteria
Marinobacter bohaiensis T17 [QGEH]
1897388
1897463
+
Lys
TTT
[ENA]
¡û
>W1810595479
QGEH01000001
Gammaproteobacteria
Marinobacter bohaiensis T17 [QGEH]
1897518
1897593
+
Lys
TTT
[ENA]
¡û
>W1810700706
QMDL01000001
Gammaproteobacteria
Marinobacter litoralis Sw-45 [QMDL]
828670
828745
+
Lys
TTT
[ENA]
¡û
>W1810700707
QMDL01000001
Gammaproteobacteria
Marinobacter litoralis Sw-45 [QMDL]
828806
828881
+
Lys
TTT
[ENA]
¡û
>W1810725114
QOCH01000013
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
107516
107441
-
Lys
TTT
[ENA]
¡û
>W1810725115
QOCH01000013
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
107369
107294
-
Lys
TTT
[ENA]
¡û
>C151083245
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
2426460
2426385
-
Lys
TTT
[Ensembl]
¡û
>C151083246
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
2426220
2426145
-
Lys
TTT
[Ensembl]
¡û
>W1511564148
LADM01000041
Gammaproteobacteria
Gammaproteobacteria bacterium BRH_c0 [LADM]
50350
50425
+
Lys
TTT
[ENA]
¡û
>C131005694
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
2446723
2446648
-
Lys
TTT
[Ensembl]
¡û
>C131005695
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
2446483
2446408
-
Lys
TTT
[Ensembl]
¡û
>W1710589997
FRAQ01000001
Gammaproteobacteria
Marinobacter antarcticus [FRAQ]
2195438
2195513
+
Lys
TTT
[ENA]
¡û
>W1710589998
FRAQ01000001
Gammaproteobacteria
Marinobacter antarcticus [FRAQ]
2195586
2195661
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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