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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465080 (72 seq.)
>W1710892674
LNDZ01000022
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
128721
128646
-
Ala
GGC
[ENA]
¡û
>W1710925688
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
4007
3932
-
Ala
GGC
[ENA]
¡û
>W1710925699
LODL01000022
Betaproteobacteria
Dechloromonas denitrificans [LODL]
438
363
-
Ala
GGC
[ENA]
¡û
>W1710925712
LODL01000036
Betaproteobacteria
Dechloromonas denitrificans [LODL]
368
443
+
Ala
GGC
[ENA]
¡û
>W1711421788
MHZV01000063
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_19 [MHZV]
2910
2985
+
Ala
GGC
[ENA]
¡û
>W1711718066
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
295684
295609
-
Ala
GGC
[ENA]
¡û
>W1711718069
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
295342
295267
-
Ala
GGC
[ENA]
¡û
>W131159956
AQWB01000012
Betaproteobacteria
Rhodocyclus sp. UW 659-1-F08 [AQWB]
8059
8134
+
Ala
GGC
[ENA]
¡û
>C007506
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1438536
1438461
-
Ala
GGC
[Ensembl]
¡û
>C007509
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1438172
1438097
-
Ala
GGC
[Ensembl]
¡û
>WENV180259663
OBEQ011126775
[OBEQ] groundwater metagenome; groundwater
101
26
-
Ala
GGC
[ENA]
¢þ
>WENV180284278
OBID01025925
[OBID] metagenome; sludge
408
333
-
Ala
GGC
[ENA]
¢þ
>WENV180371199
OBOI01000721
[OBOI] sediment metagenome; sediment
1289
1364
+
Ala
GGC
[ENA]
¢þ
>WENV181312087
OFJB01040418
[OFJB] sludge metagenome; sludge
307
232
-
Ala
GGC
[ENA]
¢þ
>WENV181371570
OFQV01019928
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
423
348
-
Ala
GGC
[ENA]
¢þ
>WENV181376094
OFQZ01016009
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
1248
1323
+
Ala
GGC
[ENA]
¢þ
>WENV181390200
OFRO01026141
[OFRO] wastewater metagenome; Exp Tend NO 10WW
664
739
+
Ala
GGC
[ENA]
¢þ
>WENV183665114
ORJL010442339
[ORJL] groundwater metagenome; groundwater
2518
2443
-
Ala
GGC
[ENA]
¢þ
>WENV183679929
ORMF010121639
[ORMF] groundwater metagenome; groundwater
7704
7629
-
Ala
GGC
[ENA]
¢þ
>WENV183689373
ORMF011430663
[ORMF] groundwater metagenome; groundwater
29255
29180
-
Ala
GGC
[ENA]
¢þ
>WENV170010664
APMI01024510
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3097
3172
+
Ala
GGC
[ENA]
¢þ
>WENV170011317
APMI01055651
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
76
1
-
Ala
GGC
[ENA]
¢þ
>WENV170011676
APMI01081498
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1541
1616
+
Ala
GGC
[ENA]
¢þ
>W141426786
JEMX01000039
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
144
69
-
Ala
GGC
[ENA]
¡û
>W141426800
JEMX01000098
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
30442
30517
+
Ala
GGC
[ENA]
¡û
>W141426828
JEMY01000036
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
8159
8234
+
Ala
GGC
[ENA]
¡û
>W141426833
JEMY01000038
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
74825
74750
-
Ala
GGC
[ENA]
¡û
>WENV170551493
CXWJ01009541
[CXWJ] wastewater metagenome; activated sludge
76
1
-
Ala
GGC
[ENA]
¢þ
>WENV170553533
CXWK01022320
[CXWK] wastewater metagenome; activated sludge
901
826
-
Ala
GGC
[ENA]
¢þ
>WENV170571536
FLOH01000193
[FLOH] marine metagenome; water
163502
163577
+
Ala
GGC
[ENA]
¢þ
>WENV170639288
JFJP01001759
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12840
12765
-
Ala
GGC
[ENA]
¢þ
>WENV170639545
JFJP01004283
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1510
1585
+
Ala
GGC
[ENA]
¢þ
>WENV170639819
JFJP01008968
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5208
5283
+
Ala
GGC
[ENA]
¢þ
>WENV170662027
JXWV01179374
[JXWV] soil metagenome; rice field; organic FYM Plot
102
177
+
Ala
GGC
[ENA]
¢þ
>WENV170709277
LNFM01000237
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12270
12345
+
Ala
GGC
[ENA]
¢þ
>WENV170961495
MLJW01000090
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
32372
32447
+
Ala
GGC
[ENA]
¢þ
>C191081683
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1171802
1171727
-
Ala
GGC
-
¡û
>C191081686
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1171436
1171361
-
Ala
GGC
-
¡û
>W09100899
AADF01000009
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
71864
71939
+
Ala
GGC
[ENA]
¡û
>W09100902
AADF01000009
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
72228
72303
+
Ala
GGC
[ENA]
¡û
>W1910128400
BHVV01000008
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
566083
566008
-
Ala
GGC
[ENA]
¡û
>C151000924
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
2733921
2733846
-
Ala
GGC
[Ensembl]
¡û
>C151071213
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
1961334
1961259
-
Ala
GGC
[Ensembl]
¡û
>C10101097
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
22372
22447
+
Ala
GGC
[Ensembl]
¡û
>W11114427
ADDK02000003
Betaproteobacteria
Azospira oryzae PS [ADDK]
253595
253670
+
Ala
GGC
[ENA]
¡û
>W11114430
ADDK02000003
Betaproteobacteria
Azospira oryzae PS [ADDK]
254168
254243
+
Ala
GGC
[ENA]
¡û
>W1511592953
LBIU01000552
Betaproteobacteria
Candidatus Accumulibacter adiacens phosphatis [LBIU]
1064
989
-
Ala
GGC
[ENA]
¡û
>W1511592971
LBIV01000071
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
13537
13462
-
Ala
GGC
[ENA]
¡û
>C121006949
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
2963149
2963224
+
Ala
GGC
[Ensembl]
¡û
>C121006952
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
2963722
2963797
+
Ala
GGC
[Ensembl]
¡û
>W1610506403
FLQX01000001
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
76262
76187
-
Ala
GGC
[ENA]
¡û
>W1610506406
FLQX01000002
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
22461
22386
-
Ala
GGC
[ENA]
¡û
>W1610506461
FLQY01000168
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
33974
34049
+
Ala
GGC
[ENA]
¡û
>W1610506466
FLQY01000179
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
70
145
+
Ala
GGC
[ENA]
¡û
>W1610617625
LGUD01000042
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
253118
253043
-
Ala
GGC
[ENA]
¡û
>W1610617628
LGUD01000042
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
252613
252538
-
Ala
GGC
[ENA]
¡û
>W1610752940
LNDZ01000022
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
128721
128646
-
Ala
GGC
[ENA]
¡û
>W1610783334
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
4007
3932
-
Ala
GGC
[ENA]
¡û
>W1610783345
LODL01000022
Betaproteobacteria
Dechloromonas denitrificans [LODL]
438
363
-
Ala
GGC
[ENA]
¡û
>W1610783358
LODL01000036
Betaproteobacteria
Dechloromonas denitrificans [LODL]
368
443
+
Ala
GGC
[ENA]
¡û
>WENV079709
AATN01000002
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
45544
45469
-
Ala
GGC
[ENA]
>WENV079956
AATO01000009
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
80703
80778
+
Ala
GGC
[ENA]
>WENV080011
AATO01000608
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
2577
2502
-
Ala
GGC
[ENA]
>WENV080013
AATO01000615
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
454
379
-
Ala
GGC
[ENA]
>WENV080135
AATO01008292
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
405
480
+
Ala
GGC
[ENA]
>W1710498906
FLQX01000001
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
76262
76187
-
Ala
GGC
[ENA]
¡û
>W1710498909
FLQX01000002
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
22461
22386
-
Ala
GGC
[ENA]
¡û
>W1710498964
FLQY01000168
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
33974
34049
+
Ala
GGC
[ENA]
¡û
>W1710498969
FLQY01000179
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
70
145
+
Ala
GGC
[ENA]
¡û
>W1710516957
FNCY01000016
Betaproteobacteria
Propionivibrio dicarboxylicus [FNCY]
93819
93744
-
Ala
GGC
[ENA]
¡û
>W1710743175
LGUD01000042
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
253118
253043
-
Ala
GGC
[ENA]
¡û
>W1710743178
LGUD01000042
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
252613
252538
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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