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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465188 (80 seq.)
>W1710876582
LMPI01000032
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
122693
122618
-
Lys
CTT
[ENA]
¡û
>W1710876638
LMPK01000009
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
121558
121483
-
Lys
CTT
[ENA]
¡û
>W1710909095
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
198563
198638
+
Lys
CTT
[ENA]
¡û
>W1711003156
LQGV01000001
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
737297
737222
-
Lys
CTT
[ENA]
¡û
>W1711009280
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
206125
206200
+
Lys
CTT
[ENA]
¡û
>W1711022940
LRAD01000056
Actinomycetota
Microbacterium laevaniformans [LRAD]
24361
24436
+
Lys
CTT
[ENA]
¡û
>W1711061105
LRYC01000032
Actinomycetota
Microbacterium hominis [LRYC]
13000
13075
+
Lys
CTT
[ENA]
¡û
>W1711082390
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
798368
798441
+
Lys
CTT
[ENA]
¡û
>W1711270773
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
494295
494220
-
Lys
CTT
[ENA]
¡û
>W1711385504
MEEH01000019
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
86701
86776
+
Lys
CTT
[ENA]
¡û
>W1711385604
MEEJ01000011
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
114946
115021
+
Lys
CTT
[ENA]
¡û
>W1711385650
MEEK01000042
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
1739
1814
+
Lys
CTT
[ENA]
¡û
>W1711385666
MEEL01000018
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
111478
111553
+
Lys
CTT
[ENA]
¡û
>W1711386929
MEGA01000009
Actinomycetota
Microbacterium sp. SCN 71-21 [MEGA]
20897
20972
+
Lys
CTT
[ENA]
¡û
>W131161911
AQYD01000005
Actinomycetota
Microbacterium sp. 292MF [AQYD]
750829
750754
-
Lys
CTT
[ENA]
¡û
>W131204592
ATCC01000007
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
116155
116230
+
Lys
CTT
[ENA]
¡û
>W1711501576
MKRU01000015
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
10061
9986
-
Lys
CTT
[ENA]
¡û
>W1711502207
MKSL01000017
Actinomycetota
Microbacterium sp. 71-23 [MKSL]
64166
64241
+
Lys
CTT
[ENA]
¡û
>W1711503435
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
560102
560027
-
Lys
CTT
[ENA]
¡û
>W1711503461
MKTQ01000014
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
115058
115133
+
Lys
CTT
[ENA]
¡û
>C171073401
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
831143
831068
-
Lys
CTT
-
¡û
>C171083227
CP018762
Actinomycetota
Microbacterium aurum KACC 15219 [CP018762]
1625171
1625246
+
Lys
CTT
-
¡û
>W141223174
BADA01000182
Actinomycetota
Microbacterium sp. B19 [BADA]
1185
1110
-
Lys
CTT
[ENA]
¡û
>W141230034
BASQ01000001
Actinomycetota
Microbacterium sp. TS-1 [BASQ]
521825
521750
-
Lys
CTT
[ENA]
¡û
>W141291996
JAUF01000067
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
2227
2152
-
Lys
CTT
[ENA]
¡û
>WENV183728513
PJTQ01000101
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
26867
26940
+
Lys
CTT
[ENA]
¢þ
>WENV183735267
PJUA01006526
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
241
166
-
Lys
CTT
[ENA]
¢þ
>WENV183736296
PJUC01000455
[PJUC] soil metagenome; Soil enriched on filter paper
7351
7276
-
Lys
CTT
[ENA]
¢þ
>WENV183737120
PJUD01000498
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
6798
6725
-
Lys
CTT
[ENA]
¢þ
>WENV183740151
PJUF01000490
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
13642
13569
-
Lys
CTT
[ENA]
¢þ
>WENV170833767
MDSZ01085545
[MDSZ] marine metagenome; seawater
35627
35552
-
Lys
CTT
[ENA]
¢þ
>C181115682
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
1668750
1668825
+
Lys
CTT
-
¡û
>C191056029
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
1519154
1519229
+
Lys
CTT
-
¡û
>C191122383
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
2077386
2077311
-
Lys
CTT
-
¡û
>W141739347
JNNT01000070
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
7872
7797
-
Lys
CTT
[ENA]
¡û
>W1910182569
BJNA01000003
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
15702
15775
+
Lys
CTT
[ENA]
¡û
>W1910913717
NHRF01000004
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
539
464
-
Lys
CTT
[ENA]
¡û
>W1911159681
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
530195
530120
-
Lys
CTT
[ENA]
¡û
>W1810262643
PQSV01000001
Actinomycetota
Microbacterium sp. Ru50 [PQSV]
521192
521117
-
Lys
CTT
[ENA]
¡û
>W1810475485
QAJB01000150
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
15349
15424
+
Lys
CTT
[ENA]
¡û
>W1810538335
QDFT01000007
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
64552
64477
-
Lys
CTT
[ENA]
¡û
>W1810586227
QFFE01000008
Actinomycetota
Microbacterium sp. KCTC 39802 [QFFE]
133902
133828
-
Lys
CTT
[ENA]
¡û
>W1810698870
QMBN01000001
Actinomycetota
Microbacterium sp. SMR1 [QMBN]
544105
544180
+
Lys
CTT
[ENA]
¡û
>W1810722513
QNUV01000041
Actinomycetota
Microbacterium arborescens DSM 20754 [QNUV]
585775
585848
+
Lys
CTT
[ENA]
¡û
>W1810722548
QNUW01000008
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
426
351
-
Lys
CTT
[ENA]
¡û
>W1810787050
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
444362
444287
-
Lys
CTT
[ENA]
¡û
>W1810861589
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
127094
127169
+
Lys
CTT
[ENA]
¡û
>C11115190
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
3449810
3449883
+
Lys
CTT
[Ensembl]
¡û
>W1511398202
JTDK01000010
Actinomycetota
Microbacterium mangrovi MUSC 115 [JTDK]
181985
182060
+
Lys
CTT
[ENA]
¡û
>W1511489517
JWSZ01000011
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
72400
72325
-
Lys
CTT
[ENA]
¡û
>W1511528901
JYIY01000079
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
188886
188811
-
Lys
CTT
[ENA]
¡û
>W1511528973
JYJA01000031
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
152317
152242
-
Lys
CTT
[ENA]
¡û
>W1610050276
BBFR01000440
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
585
660
+
Lys
CTT
[ENA]
¡û
>W1610068056
BCRA01000023
Actinomycetota
Microbacterium resistens NBRC 103078 [BCRA]
4745
4820
+
Lys
CTT
[ENA]
¡û
>W1610073985
BCWI01000001
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
727458
727383
-
Lys
CTT
[ENA]
¡û
>W121061238
AJGR01000119
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
2604
2679
+
Lys
CTT
[ENA]
¡û
>W1610590748
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
37032
36959
-
Lys
CTT
[ENA]
¡û
>W1610590784
LDRS01000012
Actinomycetota
Microbacterium testaceum [LDRS]
117968
118041
+
Lys
CTT
[ENA]
¡û
>W1610590857
LDRT01000139
Actinomycetota
Microbacterium testaceum [LDRT]
16117
16190
+
Lys
CTT
[ENA]
¡û
>W1610590882
LDRU01000027
Actinomycetota
Microbacterium testaceum [LDRU]
61971
61896
-
Lys
CTT
[ENA]
¡û
>W1610590938
LDRV01000077
Actinomycetota
Microbacterium testaceum [LDRV]
3148
3221
+
Lys
CTT
[ENA]
¡û
>W1610738928
LMPI01000032
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
122693
122618
-
Lys
CTT
[ENA]
¡û
>W1610738984
LMPK01000009
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
121558
121483
-
Lys
CTT
[ENA]
¡û
>W1610767454
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
198563
198638
+
Lys
CTT
[ENA]
¡û
>W1610853721
LQGV01000001
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
737297
737222
-
Lys
CTT
[ENA]
¡û
>W1610857800
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
206125
206200
+
Lys
CTT
[ENA]
¡û
>W1610871185
LRAD01000056
Actinomycetota
Microbacterium laevaniformans [LRAD]
24361
24436
+
Lys
CTT
[ENA]
¡û
>W1610902082
LRYC01000032
Actinomycetota
Microbacterium hominis [LRYC]
13000
13075
+
Lys
CTT
[ENA]
¡û
>W1610921175
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
798368
798441
+
Lys
CTT
[ENA]
¡û
>W1611030337
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
494295
494220
-
Lys
CTT
[ENA]
¡û
>W1710046675
BBFR01000440
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
585
660
+
Lys
CTT
[ENA]
¡û
>W1710065429
BCRA01000023
Actinomycetota
Microbacterium resistens NBRC 103078 [BCRA]
4745
4820
+
Lys
CTT
[ENA]
¡û
>W1710071103
BCWI01000001
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
727458
727383
-
Lys
CTT
[ENA]
¡û
>W1710510817
FMYG01000002
Actinomycetota
Microbacterium enclense [FMYG]
198563
198638
+
Lys
CTT
[ENA]
¡û
>W1710597975
FTNQ01000001
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
143874
143949
+
Lys
CTT
[ENA]
¡û
>W1710710028
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
37032
36959
-
Lys
CTT
[ENA]
¡û
>W1710710064
LDRS01000012
Actinomycetota
Microbacterium testaceum [LDRS]
117968
118041
+
Lys
CTT
[ENA]
¡û
>W1710710137
LDRT01000139
Actinomycetota
Microbacterium testaceum [LDRT]
16117
16190
+
Lys
CTT
[ENA]
¡û
>W1710710162
LDRU01000027
Actinomycetota
Microbacterium testaceum [LDRU]
61971
61896
-
Lys
CTT
[ENA]
¡û
>W1710710218
LDRV01000077
Actinomycetota
Microbacterium testaceum [LDRV]
3148
3221
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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