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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465220 (58 seq.)
>W131095752
AOPM01000071
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
99316
99391
+
Gly
GCC
[ENA]
¡û
>W131095753
AOPM01000071
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
99460
99535
+
Gly
GCC
[ENA]
¡û
>W131095754
AOPM01000071
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
99604
99679
+
Gly
GCC
[ENA]
¡û
>W131223273
AUBY01000011
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
108179
108254
+
Gly
GCC
[ENA]
¡û
>W131223276
AUBY01000011
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
108497
108572
+
Gly
GCC
[ENA]
¡û
>W131223290
AUBY01000024
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
92
17
-
Gly
GCC
[ENA]
¡û
>W131223293
AUBY01000033
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
33859
33784
-
Gly
GCC
[ENA]
¡û
>W131223313
AUBZ01000012
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
81
6
-
Gly
GCC
[ENA]
¡û
>W131223339
AUBZ01000028
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
34182
34257
+
Gly
GCC
[ENA]
¡û
>W131223340
AUBZ01000028
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
34379
34454
+
Gly
GCC
[ENA]
¡û
>W131228983
AUGL01000006
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
32054
32129
+
Gly
GCC
[ENA]
¡û
>W131229012
AUGL01000019
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
9
84
+
Gly
GCC
[ENA]
¡û
>W131229013
AUGL01000020
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
84
9
-
Gly
GCC
[ENA]
¡û
>WENV170361795
CETM01028070
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
185
110
-
Gly
GCC
[ENA]
¢þ
>WENV170454467
CEVA01040693
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
183
108
-
Gly
GCC
[ENA]
¢þ
>W1810248780
PQBV01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
127201
127276
+
Gly
GCC
[ENA]
¡û
>W1810248781
PQBV01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
127409
127484
+
Gly
GCC
[ENA]
¡û
>W1810248782
PQBV01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
127566
127641
+
Gly
GCC
[ENA]
¡û
>W1810248848
PQBW01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
13407
13482
+
Gly
GCC
[ENA]
¡û
>W1810248849
PQBW01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
13610
13685
+
Gly
GCC
[ENA]
¡û
>W1810248850
PQBW01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
14072
14147
+
Gly
GCC
[ENA]
¡û
>W1810248851
PQBW01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
14595
14670
+
Gly
GCC
[ENA]
¡û
>W1810248852
PQBW01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
14798
14873
+
Gly
GCC
[ENA]
¡û
>W1810249104
PQBY01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
240343
240268
-
Gly
GCC
[ENA]
¡û
>W1810249105
PQBY01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
240135
240060
-
Gly
GCC
[ENA]
¡û
>W1810249106
PQBY01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
239978
239903
-
Gly
GCC
[ENA]
¡û
>W1810249153
PQBZ01000002
Gammaproteobacteria
Pseudoalteromonas sp. T1lg23B [PQBZ]
227341
227416
+
Gly
GCC
[ENA]
¡û
>W1810249255
PQCA01000003
Gammaproteobacteria
Pseudoalteromonas sp. T1lg23Z [PQCA]
213143
213068
-
Gly
GCC
[ENA]
¡û
>W1810249430
PQCC01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
234913
234838
-
Gly
GCC
[ENA]
¡û
>W1810249431
PQCC01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
234704
234629
-
Gly
GCC
[ENA]
¡û
>W1810249432
PQCC01000001
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
234496
234421
-
Gly
GCC
[ENA]
¡û
>W1810249526
PQCD01000015
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
127547
127622
+
Gly
GCC
[ENA]
¡û
>W1810249527
PQCD01000015
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
127756
127831
+
Gly
GCC
[ENA]
¡û
>W1810249605
PQCD01000059
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
494
419
-
Gly
GCC
[ENA]
¡û
>W1810249606
PQCD01000059
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
286
211
-
Gly
GCC
[ENA]
¡û
>W1810249644
PQCE01000013
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
102434
102359
-
Gly
GCC
[ENA]
¡û
>W1810249660
PQCE01000034
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
124580
124655
+
Gly
GCC
[ENA]
¡û
>W1810249685
PQCE01000084
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
84
9
-
Gly
GCC
[ENA]
¡û
>W1810249686
PQCE01000085
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
84
9
-
Gly
GCC
[ENA]
¡û
>W1810249722
PQCF01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
45066
45141
+
Gly
GCC
[ENA]
¡û
>W1810249723
PQCF01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
45274
45349
+
Gly
GCC
[ENA]
¡û
>W1810249724
PQCF01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
45431
45506
+
Gly
GCC
[ENA]
¡û
>W1510021816
BCAI01000002
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
264279
264204
-
Gly
GCC
[ENA]
¡û
>W1510021817
BCAI01000002
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
264135
264060
-
Gly
GCC
[ENA]
¡û
>W1510021818
BCAI01000002
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
263991
263916
-
Gly
GCC
[ENA]
¡û
>C11109038
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
556312
556387
+
Gly
GCC
[Ensembl]
¡û
>C11109039
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
556419
556494
+
Gly
GCC
[Ensembl]
¡û
>C11109040
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
556526
556601
+
Gly
GCC
[Ensembl]
¡û
>C11109041
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
556637
556712
+
Gly
GCC
[Ensembl]
¡û
>C11109042
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
556748
556823
+
Gly
GCC
[Ensembl]
¡û
>C11109043
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
556859
556934
+
Gly
GCC
[Ensembl]
¡û
>C11109125
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2472633
2472558
-
Gly
GCC
[Ensembl]
¡û
>W1511518246
JXXY01000006
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
181383
181458
+
Gly
GCC
[ENA]
¡û
>W1511518247
JXXY01000006
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
181527
181602
+
Gly
GCC
[ENA]
¡û
>W1511518248
JXXY01000006
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
181671
181746
+
Gly
GCC
[ENA]
¡û
>W1511518284
JXXZ01000002
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
181383
181458
+
Gly
GCC
[ENA]
¡û
>W1511518285
JXXZ01000002
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
181527
181602
+
Gly
GCC
[ENA]
¡û
>W1511518286
JXXZ01000002
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
181671
181746
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK