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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465222 (84 seq.)
>W131095727
AOPM01000036
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
3474
3399
-
Gly
GCC
[ENA]
¡û
>W131095730
AOPM01000036
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
3138
3063
-
Gly
GCC
[ENA]
¡û
>W131095732
AOPM01000036
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
2882
2807
-
Gly
GCC
[ENA]
¡û
>W131171019
ARFX01000032
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
140317
140392
+
Gly
GCC
[ENA]
¡û
>W131171022
ARFX01000032
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
140612
140687
+
Gly
GCC
[ENA]
¡û
>W131244297
CAPN01000051
Gammaproteobacteria
Pseudoalteromonas luteoviolacea B = ATCC 29581 [CAPN]
815353
815278
-
Gly
GCC
[ENA]
¡û
>W131244300
CAPN01000051
Gammaproteobacteria
Pseudoalteromonas luteoviolacea B = ATCC 29581 [CAPN]
814965
814890
-
Gly
GCC
[ENA]
¡û
>W131244302
CAPN01000051
Gammaproteobacteria
Pseudoalteromonas luteoviolacea B = ATCC 29581 [CAPN]
814732
814657
-
Gly
GCC
[ENA]
¡û
>WENV181233526
OFET01000002
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
650062
649987
-
Gly
GCC
[ENA]
¢þ
>WENV181233597
OFET01000012
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
22596
22521
-
Gly
GCC
[ENA]
¢þ
>WENV181234183
OFEU01000002
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
650062
649987
-
Gly
GCC
[ENA]
¢þ
>WENV181234236
OFEU01000011
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
22363
22288
-
Gly
GCC
[ENA]
¢þ
>WENV170385847
CETY01107958
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4253
4328
+
Gly
GCC
[ENA]
¢þ
>WENV170876913
MDTC01048756
[MDTC] marine metagenome; seawater
97
22
-
Gly
GCC
[ENA]
¢þ
>C191132248
CP034835
Gammaproteobacteria
Pseudoalteromonas sp. R3 [CP034834, CP034835]
2814214
2814139
-
Gly
GCC
-
¡û
>C191132251
CP034835
Gammaproteobacteria
Pseudoalteromonas sp. R3 [CP034834, CP034835]
2813782
2813707
-
Gly
GCC
-
¡û
>C191132253
CP034835
Gammaproteobacteria
Pseudoalteromonas sp. R3 [CP034834, CP034835]
2813415
2813340
-
Gly
GCC
-
¡û
>W1911218954
NRRB01000001
Gammaproteobacteria
Paraferrimonas haliotis AFRC7-2-1 [NRRB]
261946
262021
+
Gly
GCC
[ENA]
¡û
>W1911219020
NRRC01000001
Gammaproteobacteria
Paraferrimonas haliotis CFD7-4-2 [NRRC]
247549
247624
+
Gly
GCC
[ENA]
¡û
>W1911585086
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
583637
583712
+
Gly
GCC
[ENA]
¡û
>W1911585123
PIPQ01000008
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
30036
29961
-
Gly
GCC
[ENA]
¡û
>W1911618895
PPUZ01000028
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
31938
31863
-
Gly
GCC
[ENA]
¡û
>W1911618897
PPUZ01000028
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
31568
31493
-
Gly
GCC
[ENA]
¡û
>W1911618913
PPUZ01000049
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
235
160
-
Gly
GCC
[ENA]
¡û
>W1911618939
PPUZ01000116
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
123
48
-
Gly
GCC
[ENA]
¡û
>W1810248827
PQBV01000037
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
11632
11557
-
Gly
GCC
[ENA]
¡û
>W1810248830
PQBV01000037
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
11249
11174
-
Gly
GCC
[ENA]
¡û
>W1810248831
PQBV01000037
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
6233
6158
-
Gly
GCC
[ENA]
¡û
>W1810248835
PQBV01000045
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
208
133
-
Gly
GCC
[ENA]
¡û
>W1810248920
PQBW01000014
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
1517
1442
-
Gly
GCC
[ENA]
¡û
>W1810248923
PQBW01000014
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
1203
1128
-
Gly
GCC
[ENA]
¡û
>W1810248925
PQBW01000014
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
925
850
-
Gly
GCC
[ENA]
¡û
>W1810249125
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
11843
11768
-
Gly
GCC
[ENA]
¡û
>W1810249128
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
11456
11381
-
Gly
GCC
[ENA]
¡û
>W1810249130
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
11067
10992
-
Gly
GCC
[ENA]
¡û
>W1810249131
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
6113
6038
-
Gly
GCC
[ENA]
¡û
>W1810249508
PQCC01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
11560
11485
-
Gly
GCC
[ENA]
¡û
>W1810249511
PQCC01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
11177
11102
-
Gly
GCC
[ENA]
¡û
>W1810249513
PQCC01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
10869
10794
-
Gly
GCC
[ENA]
¡û
>W1810249514
PQCC01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
5936
5861
-
Gly
GCC
[ENA]
¡û
>W1810249547
PQCD01000036
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
102510
102585
+
Gly
GCC
[ENA]
¡û
>W1810249551
PQCD01000036
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
103037
103112
+
Gly
GCC
[ENA]
¡û
>W1810249552
PQCD01000036
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
107943
108018
+
Gly
GCC
[ENA]
¡û
>W1810249555
PQCD01000041
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
377
452
+
Gly
GCC
[ENA]
¡û
>W1810249617
PQCE01000004
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
8
83
+
Gly
GCC
[ENA]
¡û
>W1810249618
PQCE01000004
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
4907
4982
+
Gly
GCC
[ENA]
¡û
>W1810249638
PQCE01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
286
211
-
Gly
GCC
[ENA]
¡û
>W1810249700
PQCE01000107
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
192
267
+
Gly
GCC
[ENA]
¡û
>W1810249701
PQCE01000108
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
13
88
+
Gly
GCC
[ENA]
¡û
>W1810249704
PQCE01000109
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
83
8
-
Gly
GCC
[ENA]
¡û
>W1810249741
PQCF01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
168371
168446
+
Gly
GCC
[ENA]
¡û
>W1810249744
PQCF01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
168758
168833
+
Gly
GCC
[ENA]
¡û
>W1810249746
PQCF01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
169148
169223
+
Gly
GCC
[ENA]
¡û
>W1810249747
PQCF01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
174101
174176
+
Gly
GCC
[ENA]
¡û
>W1810705088
QMIL01000001
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
289092
289017
-
Gly
GCC
[ENA]
¡û
>W1810705109
QMIL01000005
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
143144
143219
+
Gly
GCC
[ENA]
¡û
>W1810706713
QMKJ01000001
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
414461
414536
+
Gly
GCC
[ENA]
¡û
>W1810706750
QMKJ01000003
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
22391
22316
-
Gly
GCC
[ENA]
¡û
>W1510021870
BCAI01000016
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
3033
2958
-
Gly
GCC
[ENA]
¡û
>W1510021873
BCAI01000016
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
2697
2622
-
Gly
GCC
[ENA]
¡û
>W1510021875
BCAI01000016
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
2442
2367
-
Gly
GCC
[ENA]
¡û
>W1511518220
JXXY01000001
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
3284
3209
-
Gly
GCC
[ENA]
¡û
>W1511518223
JXXY01000001
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
2948
2873
-
Gly
GCC
[ENA]
¡û
>W1511518225
JXXY01000001
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
2692
2617
-
Gly
GCC
[ENA]
¡û
>W1511518297
JXXZ01000004
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
320905
320980
+
Gly
GCC
[ENA]
¡û
>W1511518300
JXXZ01000004
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
321241
321316
+
Gly
GCC
[ENA]
¡û
>W1511518302
JXXZ01000004
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
321497
321572
+
Gly
GCC
[ENA]
¡û
>W1511518389
JXYA01000033
Gammaproteobacteria
Pseudoalteromonas rubra S2471 [JXYA]
235
160
-
Gly
GCC
[ENA]
¡û
>W1511518400
JXYA01000044
Gammaproteobacteria
Pseudoalteromonas rubra S2471 [JXYA]
276
351
+
Gly
GCC
[ENA]
¡û
>W1511693675
LFZX01000388
Gammaproteobacteria
Pseudoalteromonas rubra OCN096 [LFZX]
3294
3219
-
Gly
GCC
[ENA]
¡û
>W1511693678
LFZX01000388
Gammaproteobacteria
Pseudoalteromonas rubra OCN096 [LFZX]
2944
2869
-
Gly
GCC
[ENA]
¡û
>W1511693680
LFZX01000388
Gammaproteobacteria
Pseudoalteromonas rubra OCN096 [LFZX]
2650
2575
-
Gly
GCC
[ENA]
¡û
>C161057639
CP013611
Gammaproteobacteria
Pseudoalteromonas rubra SCSIO 6842 [CP013611, CP013612]
101258
101333
+
Gly
GCC
[Ensembl]
¡û
>C161057642
CP013611
Gammaproteobacteria
Pseudoalteromonas rubra SCSIO 6842 [CP013611, CP013612]
101652
101727
+
Gly
GCC
[Ensembl]
¡û
>C161057644
CP013611
Gammaproteobacteria
Pseudoalteromonas rubra SCSIO 6842 [CP013611, CP013612]
102039
102114
+
Gly
GCC
[Ensembl]
¡û
>C161107770
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
1216856
1216931
+
Gly
GCC
-
¡û
>C161107805
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
2123400
2123325
-
Gly
GCC
-
¡û
>W121025275
AHCD01000012
Gammaproteobacteria
Pseudoalteromonas rubra ATCC 29570 [AHCD]
111444
111519
+
Gly
GCC
[ENA]
¡û
>W121025278
AHCD01000012
Gammaproteobacteria
Pseudoalteromonas rubra ATCC 29570 [AHCD]
111832
111907
+
Gly
GCC
[ENA]
¡û
>W121025280
AHCD01000012
Gammaproteobacteria
Pseudoalteromonas rubra ATCC 29570 [AHCD]
112217
112292
+
Gly
GCC
[ENA]
¡û
>W1610629352
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
649970
649895
-
Gly
GCC
[ENA]
¡û
>W1610629367
LIHO01000012
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
360382
360457
+
Gly
GCC
[ENA]
¡û
>W1710760491
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
649970
649895
-
Gly
GCC
[ENA]
¡û
>W1710760506
LIHO01000012
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
360382
360457
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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