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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465223 (22 seq.)
>W1710810743
LKHR01000119
Gammaproteobacteria
Vibrio fluvialis [LKHR]
202
127
-
Thr
GGT
[ENA]
¡û
>C171089329
CP019118
Gammaproteobacteria
Vibrio fluvialis 12605 [CP019118, CP019119]
2794630
2794555
-
Thr
GGT
-
¡û
>W131203128
ASXS01000043
Gammaproteobacteria
Vibrio fluvialis PG41 [ASXS]
210
285
+
Thr
GGT
[ENA]
¡û
>W131203193
ASXT01000080
Gammaproteobacteria
Vibrio fluvialis I21563 [ASXT]
1368
1293
-
Thr
GGT
[ENA]
¡û
>W131205622
ATEV01000171
Gammaproteobacteria
Vibrio paracholerae VCC19 [ATEV]
246
171
-
Thr
GGT
[ENA]
¡û
>WENV170588410
FUFK010560098
[FUFK] metagenome; unknown
90
165
+
Thr
GGT
[ENA]
¢þ
>WENV170657738
JTFP01013234
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
868
943
+
Thr
GGT
[ENA]
¢þ
>C181014562
CP014033
Gammaproteobacteria
Vibrio fluvialis FDAARGOS_100 [CP014032, CP014033]
1324637
1324562
-
Thr
GGT
-
¡û
>C191184557
CP040990
Gammaproteobacteria
Vibrio furnissii FDAARGOS_777 [CP040990, CP040991]
736940
737015
+
Thr
GGT
-
¡û
>W141815357
JQHW01000005
Gammaproteobacteria
Vibrio fluvialis 560 [JQHW]
324
249
-
Thr
GGT
[ENA]
¡û
>W1810110820
PHIF01000047
Gammaproteobacteria
Vibrio fluvialis QY27 [PHIF]
5782
5857
+
Thr
GGT
[ENA]
¡û
>SRA1004616
SRR006906.86394
metagenomic water samples (SRP000427)
253
178
-
Thr
GGT
[SRA]
>W10107687
ACZP01000015
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
15370
15445
+
Thr
GGT
[ENA]
¡û
>W11110074
ACZP01000015
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
15370
15445
+
Thr
GGT
[ENA]
¡û
>W1511327198
JQHX01000079
Gammaproteobacteria
Vibrio fluvialis 539 [JQHX]
324
249
-
Thr
GGT
[ENA]
¡û
>W1511403751
JTLJ01000087
Gammaproteobacteria
Vibrio fluvialis ZOR0035 [JTLJ]
266
191
-
Thr
GGT
[ENA]
¡û
>C11123500
CP002377
Gammaproteobacteria
Vibrio furnissii NCTC 11218 [CP002377, CP002378]
49219
49144
-
Thr
GGT
[Ensembl]
¡û
>W1511517743
JXXQ01000106
Gammaproteobacteria
Vibrio fluvialis 3663 [JXXQ]
5556
5631
+
Thr
GGT
[ENA]
¡û
>C161065363
CP014035
Gammaproteobacteria
Vibrio fluvialis ATCC 33809 [CP014034, CP014035]
2510640
2510565
-
Thr
GGT
-
¡û
>W1610077764
BCZR01000026
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
5689
5764
+
Thr
GGT
[ENA]
¡û
>W1610674798
LKHR01000119
Gammaproteobacteria
Vibrio fluvialis [LKHR]
202
127
-
Thr
GGT
[ENA]
¡û
>W1710075402
BCZR01000026
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
5689
5764
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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