This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465336 (97 seq.)
>W1710926741
LOEL01000001
Bacteroidota
Porphyromonas gingivalis [LOEL]
136655
136730
+
Trp
CCA
[ENA]
¡û
>W1711066311
LSCS01000102
Bacteroidota
Bacteroidales bacterium KA00251 [LSCS]
58677
58752
+
Trp
CCA
[ENA]
¡û
>W131111424
APMB01000045
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
78050
78125
+
Trp
CCA
[ENA]
¡û
>W131175820
ARJN01000067
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
117349
117424
+
Trp
CCA
[ENA]
¡û
>W1712084879
NHRU01000007
Bacteroidota
Porphyromonas gingivalis [NHRU]
86261
86336
+
Trp
CCA
[ENA]
¡û
>C016353
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
422041
422116
+
Trp
CCA
[Ensembl]
¡û
>WENV180003976
FLRQ01000390
[FLRQ] metagenome; saliva
449
376
-
Trp
CCA
[ENA]
¢þ
>WENV180004322
FLRR01098189
[FLRR] metagenome; saliva
46
119
+
Trp
CCA
[ENA]
¢þ
>WENV180006176
FLRX01230930
[FLRX] metagenome; saliva
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV180007343
FLSA01002434
[FLSA] metagenome; saliva
586
659
+
Trp
CCA
[ENA]
¢þ
>WENV180009991
FLSC01214179
[FLSC] metagenome; saliva
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV180011005
FLSI01073313
[FLSI] metagenome; saliva
137
210
+
Trp
CCA
[ENA]
¢þ
>WENV180223631
OBBH01000642
[OBBH] human gut metagenome; human gut
1376
1451
+
Trp
CCA
[ENA]
¢þ
>WENV180717077
ODGA01012060
[ODGA] human metagenome; G_DNA_Buccal mucosa
184
111
-
Trp
CCA
[ENA]
¢þ
>WENV180731613
ODGW01003461
[ODGW] human metagenome; G_DNA_Supragingival plaque
222
295
+
Trp
CCA
[ENA]
¢þ
>W141074418
ASYL01000001
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
19113
19038
-
Trp
CCA
[ENA]
¡û
>W141145647
AWUU01000136
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
42660
42735
+
Trp
CCA
[ENA]
¡û
>W141145662
AWUV01000015
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
7300
7375
+
Trp
CCA
[ENA]
¡û
>W141145736
AWUW01000138
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
16150
16225
+
Trp
CCA
[ENA]
¡û
>W141145976
AWVC01000163
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
15883
15958
+
Trp
CCA
[ENA]
¡û
>W141146018
AWVD01000223
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
50617
50542
-
Trp
CCA
[ENA]
¡û
>W141146045
AWVE01000085
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
50633
50558
-
Trp
CCA
[ENA]
¡û
>WENV181757102
OGQT01008254
[OGQT] human gut metagenome; faeces
3213
3138
-
Trp
CCA
[ENA]
¢þ
>WENV181769720
OGRA01075591
[OGRA] human gut metagenome; faeces
328
254
-
Trp
CCA
[ENA]
¢þ
>WENV181774516
OGRE01031101
[OGRE] human gut metagenome; faeces
648
722
+
Trp
CCA
[ENA]
¢þ
>WENV182004530
OHBE01000116
[OHBE] human gut metagenome; faeces
86619
86546
-
Trp
CCA
[ENA]
¢þ
>WENV182677573
OJNR01055570
[OJNR] human gut metagenome; human gut
32
107
+
Trp
CCA
[ENA]
¢þ
>C08007297
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
1768436
1768361
-
Trp
CCA
[Ensembl]
¡û
>WENV183507908
OMGZ01000267
[OMGZ] human oral metagenome; human oral
1776
1703
-
Trp
CCA
[ENA]
¢þ
>WENV183508039
OMHA01003404
[OMHA] human oral metagenome; human oral
595
522
-
Trp
CCA
[ENA]
¢þ
>WENV183510902
OMHT01000201
[OMHT] human oral metagenome; human oral
549
476
-
Trp
CCA
[ENA]
¢þ
>C181102087
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
1870603
1870676
+
Trp
CCA
-
¡û
>C181102116
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
498139
498212
+
Trp
CCA
-
¡û
>C181102202
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
694795
694722
-
Trp
CCA
-
¡û
>C181102235
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
2093614
2093541
-
Trp
CCA
-
¡û
>C181102261
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
309573
309646
+
Trp
CCA
-
¡û
>C181102351
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
528804
528731
-
Trp
CCA
-
¡û
>C181102402
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
384331
384258
-
Trp
CCA
-
¡û
>C181102428
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1536115
1536188
+
Trp
CCA
-
¡û
>C181102479
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1643070
1643143
+
Trp
CCA
-
¡û
>C181102516
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
759154
759227
+
Trp
CCA
-
¡û
>C181102592
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
1112545
1112472
-
Trp
CCA
-
¡û
>C181123601
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
1794333
1794260
-
Trp
CCA
-
¡û
>C181123627
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
158848
158921
+
Trp
CCA
-
¡û
>C181123678
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
422041
422114
+
Trp
CCA
-
¡û
>W1910371035
FUFB01000057
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
70060
70133
+
Trp
CCA
[ENA]
¡û
>W1910371056
FUFC01000010
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
154013
154086
+
Trp
CCA
[ENA]
¡û
>W1910371104
FUFD01000030
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
114795
114722
-
Trp
CCA
[ENA]
¡û
>W1910371136
FUFE01000012
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
11451
11378
-
Trp
CCA
[ENA]
¡û
>W1910371183
FUFF01000008
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
155636
155709
+
Trp
CCA
[ENA]
¡û
>W1910371228
FUFG01000019
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
121614
121687
+
Trp
CCA
[ENA]
¡û
>W1910371280
FUFH01000042
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
16352
16425
+
Trp
CCA
[ENA]
¡û
>W1910371321
FUFI01000016
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
36720
36647
-
Trp
CCA
[ENA]
¡û
>W1910371363
FUFJ01000042
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
42697
42624
-
Trp
CCA
[ENA]
¡û
>W1910372575
FUGF01000050
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
42731
42658
-
Trp
CCA
[ENA]
¡û
>W1910372599
FUGG01000005
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
19161
19234
+
Trp
CCA
[ENA]
¡û
>W1911247361
NSLL01000003
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
91550
91623
+
Trp
CCA
[ENA]
¡û
>W1911247401
NSLM01000001
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
108135
108062
-
Trp
CCA
[ENA]
¡û
>W1911247448
NSLN01000008
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
51861
51788
-
Trp
CCA
[ENA]
¡û
>W1911247490
NSLO01000002
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
18328
18255
-
Trp
CCA
[ENA]
¡û
>W1911247528
NSLP01000001
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
27753
27680
-
Trp
CCA
[ENA]
¡û
>W1911247571
NSLQ01000001
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
107819
107746
-
Trp
CCA
[ENA]
¡û
>W1911247645
NSLR01000033
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
16498
16571
+
Trp
CCA
[ENA]
¡û
>W1911247659
NSLS01000001
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
122446
122519
+
Trp
CCA
[ENA]
¡û
>W1911247702
NSLT01000001
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
31812
31885
+
Trp
CCA
[ENA]
¡û
>W1911247763
NSLU01000031
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
5830
5757
-
Trp
CCA
[ENA]
¡û
>W1911247788
NSLV01000001
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
124283
124356
+
Trp
CCA
[ENA]
¡û
>W1911247842
NSLW01000003
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
121759
121832
+
Trp
CCA
[ENA]
¡û
>W1911247883
NSLX01000003
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
18624
18551
-
Trp
CCA
[ENA]
¡û
>W1911709110
QPGS01000004
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
94448
94521
+
Trp
CCA
[ENA]
¡û
>C151089056
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1739383
1739308
-
Trp
CCA
-
¡û
>C151089104
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1693663
1693588
-
Trp
CCA
-
¡û
>C11117303
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
1559251
1559326
+
Trp
CCA
[Ensembl]
¡û
>W1511328358
JQJE01000020
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
49505
49430
-
Trp
CCA
[ENA]
¡û
>W1511336130
JQZY01000014
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
89414
89339
-
Trp
CCA
[ENA]
¡û
>W1511336349
JRAE01000012
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
26197
26272
+
Trp
CCA
[ENA]
¡û
>W1511336388
JRAF01000004
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
26671
26746
+
Trp
CCA
[ENA]
¡û
>W1511336434
JRAG01000004
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
22694
22619
-
Trp
CCA
[ENA]
¡û
>W1511336520
JRAI01000002
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
22556
22481
-
Trp
CCA
[ENA]
¡û
>W1511336583
JRAJ01000010
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
186780
186705
-
Trp
CCA
[ENA]
¡û
>W1511336646
JRAK01000143
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
33138
33213
+
Trp
CCA
[ENA]
¡û
>W1511336686
JRAL01000051
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
26618
26693
+
Trp
CCA
[ENA]
¡û
>W1511336813
JRAQ01000003
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
39849
39774
-
Trp
CCA
[ENA]
¡û
>W1511336940
JRAT01000012
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
534514
534439
-
Trp
CCA
[ENA]
¡û
>W1511343927
JRFD01000026
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
48441
48516
+
Trp
CCA
[ENA]
¡û
>C161018146
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
2267613
2267538
-
Trp
CCA
[Ensembl]
¡û
>C161046942
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1792419
1792344
-
Trp
CCA
-
¡û
>C161051789
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
1694605
1694530
-
Trp
CCA
-
¡û
>W121073551
AJZS01000026
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
42503
42428
-
Trp
CCA
[ENA]
¡û
>W1610060558
BCBV01000109
Bacteroidota
Porphyromonas gingivalis [BCBV]
17364
17289
-
Trp
CCA
[ENA]
¡û
>W1610784234
LOEL01000001
Bacteroidota
Porphyromonas gingivalis [LOEL]
136655
136730
+
Trp
CCA
[ENA]
¡û
>W1610906881
LSCS01000102
Bacteroidota
Bacteroidales bacterium KA00251 [LSCS]
58677
58752
+
Trp
CCA
[ENA]
¡û
>W1710017892
ASYM01000085
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
18549
18474
-
Trp
CCA
[ENA]
¡û
>W1710017937
ASYN01000127
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
18567
18492
-
Trp
CCA
[ENA]
¡û
>W1710017976
ASYO01000076
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
22316
22241
-
Trp
CCA
[ENA]
¡û
>W1710017996
ASYP01000001
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
66449
66374
-
Trp
CCA
[ENA]
¡û
>W1710057813
BCBV01000109
Bacteroidota
Porphyromonas gingivalis [BCBV]
17364
17289
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK