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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465376 (28 seq.)
>W131220690
ATZQ01000126
Betaproteobacteria
beta proteobacterium SCGC AAA027-K21 [ATZQ]
11357
11282
-
Phe
GAA
[ENA]
¡û
>WENV180391035
OBPM01002165
[OBPM] marine metagenome; ENVO:00002010
1558
1633
+
Phe
GAA
[ENA]
¢þ
>WENV181307924
OFIS01000039
[OFIS] sludge metagenome; sludge
102298
102373
+
Phe
GAA
[ENA]
¢þ
>WENV181368222
OFQK01006076
[OFQK] freshwater metagenome; Freshwater Lake
316
241
-
Phe
GAA
[ENA]
¢þ
>WENV181379510
OFRD01002499
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1486
1411
-
Phe
GAA
[ENA]
¢þ
>WENV181401464
OFTX01000277
[OFTX] sludge metagenome; sludge
4903
4978
+
Phe
GAA
[ENA]
¢þ
>W141139289
AWNL01000016
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
124725
124800
+
Phe
GAA
[ENA]
¡û
>WENV183688643
ORMF011320234
[ORMF] groundwater metagenome; groundwater
8955
9030
+
Phe
GAA
[ENA]
¢þ
>WENV183729493
PJTQ01051239
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
369
444
+
Phe
GAA
[ENA]
¢þ
>WENV183740397
PJUF01001620
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7129
7204
+
Phe
GAA
[ENA]
¢þ
>WENV170574210
FLYM01014047
[FLYM] hot springs metagenome; Sediment
330
405
+
Phe
GAA
[ENA]
¢þ
>WENV170949241
MEHZ011383970
[MEHZ] marine metagenome; marine surface water
213
138
-
Phe
GAA
[ENA]
¢þ
>C181034384
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
316400
316325
-
Phe
GAA
-
¡û
>C181169413
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
3582580
3582505
-
Phe
GAA
-
¡û
>C191012275
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
306541
306466
-
Phe
GAA
-
¡û
>C141000202
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
499000
498925
-
Phe
GAA
[Ensembl]
¡û
>W1810089012
PGEK01000001
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
126487
126562
+
Phe
GAA
[ENA]
¡û
>C151101367
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
651433
651358
-
Phe
GAA
[Ensembl]
¡û
>W1510019322
BBWF01000020
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
40455
40530
+
Phe
GAA
[ENA]
¡û
>W1511310842
JPQP01000020
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
90922
90997
+
Phe
GAA
[ENA]
¡û
>C161109102
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
1613986
1613911
-
Phe
GAA
[Ensembl]
¡û
>W121124645
BAFJ01000007
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
221974
222049
+
Phe
GAA
[ENA]
¡û
>W1610074276
BCWN01000027
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
30095
30020
-
Phe
GAA
[ENA]
¡û
>W1610447566
FKBR01000046
Betaproteobacteria
Bordetella trematum [FKBR]
96449
96524
+
Phe
GAA
[ENA]
¡û
>W1610447660
FKBT01000034
Betaproteobacteria
Bordetella trematum [FKBT]
290474
290399
-
Phe
GAA
[ENA]
¡û
>W1710071394
BCWN01000027
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
30095
30020
-
Phe
GAA
[ENA]
¡û
>W1710447194
FKBR01000046
Betaproteobacteria
Bordetella trematum [FKBR]
96449
96524
+
Phe
GAA
[ENA]
¡û
>W1710447288
FKBT01000034
Betaproteobacteria
Bordetella trematum [FKBT]
290474
290399
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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