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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465413 (50 seq.)
>W1711009534
LQQT01000020
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
2050
2125
+
Ala
TGC
[ENA]
¡û
>W1711262660
LYXZ01000028
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
3648
3573
-
Ala
TGC
[ENA]
¡û
>W131224305
AUCR01000008
Alphaproteobacteria
Cucumibacter marinus DSM 18995 [AUCR]
9005
9080
+
Ala
TGC
[ENA]
¡û
>W131230713
AUHV01000006
Alphaproteobacteria
Maritalea myrionectae DSM 19524 [AUHV]
151337
151412
+
Ala
TGC
[ENA]
¡û
>C171072654
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
663631
663706
+
Ala
TGC
-
¡û
>C171072659
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
949762
949837
+
Ala
TGC
-
¡û
>WENV180368268
OBOF01046978
[OBOF] marine metagenome; ENVO:00002010
457
382
-
Ala
TGC
[ENA]
¢þ
>WENV180394337
OBPS01001459
[OBPS] marine metagenome; ENVO:00002010 seawater
1141
1216
+
Ala
TGC
[ENA]
¢þ
>WENV180695293
OCZS013274980
[OCZS] soil metagenome; soil
130
55
-
Ala
TGC
[ENA]
¢þ
>WENV181168089
OEIU01157475
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
127
202
+
Ala
TGC
[ENA]
¢þ
>WENV181234118
OFET01004708
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1
76
+
Ala
TGC
[ENA]
¢þ
>WENV181234693
OFEU01001546
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
4595
4520
-
Ala
TGC
[ENA]
¢þ
>WENV170121484
CENM01032780
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
827
752
-
Ala
TGC
[ENA]
¢þ
>WENV170130628
CENR01017659
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1077
1002
-
Ala
TGC
[ENA]
¢þ
>WENV170155437
CEOG01030121
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14
89
+
Ala
TGC
[ENA]
¢þ
>WENV170574471
FLYM01043099
[FLYM] hot springs metagenome; Sediment
599
524
-
Ala
TGC
[ENA]
¢þ
>WENV170675046
LCWZ01001853
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
2244
2169
-
Ala
TGC
[ENA]
¢þ
>WENV170705132
LLEP01005108
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
384
309
-
Ala
TGC
[ENA]
¢þ
>WENV170705352
LLEQ01021730
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
28
103
+
Ala
TGC
[ENA]
¢þ
>C181001082
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
693622
693547
-
Ala
TGC
-
¡û
>C181179113
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
3842046
3841971
-
Ala
TGC
-
¡û
>C181179116
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
3777810
3777735
-
Ala
TGC
-
¡û
>C181179122
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
3570047
3569972
-
Ala
TGC
-
¡û
>C191018788
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
628344
628419
+
Ala
TGC
-
¡û
>C191018790
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
634814
634889
+
Ala
TGC
-
¡û
>W1911696624
QMEL01000020
Alphaproteobacteria
Pelagibacterium sediminicola IMCC34151 [QMEL]
2149
2224
+
Ala
TGC
[ENA]
¡û
>W1810325532
PUEJ01000021
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
2013
2088
+
Ala
TGC
[ENA]
¡û
>W1810763447
QQBB01000028
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
3630
3555
-
Ala
TGC
[ENA]
¡û
>W1810779237
QQNH01000011
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
72376
72451
+
Ala
TGC
[ENA]
¡û
>W1810779239
QQNH01000011
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
79517
79592
+
Ala
TGC
[ENA]
¡û
>C151094736
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
2124243
2124318
+
Ala
TGC
-
¡û
>C151094742
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
2593485
2593560
+
Ala
TGC
-
¡û
>W1510741143
CYHC01000015
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
3663
3588
-
Ala
TGC
[ENA]
¡û
>C121005245
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
2872498
2872423
-
Ala
TGC
[Ensembl]
¡û
>C121005247
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
2865471
2865396
-
Ala
TGC
[Ensembl]
¡û
>WENV054102
AACY023139628
Marine microbial communities from Global Ocean Sampling (GOS)
208
283
+
Ala
TGC
[ENA]
>W121110811
ALIQ01000242
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
2045
2120
+
Ala
TGC
[ENA]
¡û
>W1610516182
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1261523
1261598
+
Ala
TGC
[ENA]
¡û
>W1610516185
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1444255
1444330
+
Ala
TGC
[ENA]
¡û
>W1610516209
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
2218112
2218037
-
Ala
TGC
[ENA]
¡û
>W1610631777
LIOL01000015
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
3663
3588
-
Ala
TGC
[ENA]
¡û
>W1610858054
LQQT01000020
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
2050
2125
+
Ala
TGC
[ENA]
¡û
>W1611024527
LYXZ01000028
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
3648
3573
-
Ala
TGC
[ENA]
¡û
>W1710501473
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1261523
1261598
+
Ala
TGC
[ENA]
¡û
>W1710501476
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1444255
1444330
+
Ala
TGC
[ENA]
¡û
>W1710501500
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
2218112
2218037
-
Ala
TGC
[ENA]
¡û
>W1710516646
FNCS01000001
Alphaproteobacteria
Pelagibacterium luteolum [FNCS]
468
393
-
Ala
TGC
[ENA]
¡û
>W1710533679
FNRH01000007
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
77321
77396
+
Ala
TGC
[ENA]
¡û
>W1710533681
FNRH01000007
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
84348
84423
+
Ala
TGC
[ENA]
¡û
>W1710764662
LIOL01000015
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
3663
3588
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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