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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465416 (15 seq.)
>W1711009508
LQQT01000001
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
288355
288280
-
Glu
TTC
[ENA]
¡û
>C171072685
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
2382278
2382203
-
Glu
TTC
-
¡û
>WENV181167225
OEIU01014731
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1192
1267
+
Glu
TTC
[ENA]
¢þ
>WENV170012400
APMI01168507
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
734
659
-
Glu
TTC
[ENA]
¢þ
>C191005693
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2630145
2630070
-
Glu
TTC
-
¡û
>W1810887328
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
1188155
1188080
-
Glu
TTC
[ENA]
¡û
>C151094776
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
47636
47561
-
Glu
TTC
-
¡û
>W1510741111
CYHC01000002
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
47415
47490
+
Glu
TTC
[ENA]
¡û
>C161001649
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
3169771
3169846
+
Glu
TTC
[Ensembl]
¡û
>C161048029
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1851419
1851344
-
Glu
TTC
-
¡û
>C161108107
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
1251391
1251316
-
Glu
TTC
[Ensembl]
¡û
>W121110796
ALIQ01000188
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
12796
12871
+
Glu
TTC
[ENA]
¡û
>W1610631745
LIOL01000002
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
47415
47490
+
Glu
TTC
[ENA]
¡û
>W1610858028
LQQT01000001
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
288355
288280
-
Glu
TTC
[ENA]
¡û
>W1710764630
LIOL01000002
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
47415
47490
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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