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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465568 (84 seq.)
>W1710785365
LJHU01000042
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
9284
9209
-
Ala
GGC
[ENA]
¡û
>W1710877314
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
74263
74188
-
Ala
GGC
[ENA]
¡û
>W1711074236
LSJI01000230
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
344
269
-
Ala
GGC
[ENA]
¡û
>W1711075192
LSKE01000233
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
26283
26208
-
Ala
GGC
[ENA]
¡û
>W1711386074
MEEW01000055
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
15568
15493
-
Ala
GGC
[ENA]
¡û
>W1711386118
MEEX01000027
Alphaproteobacteria
Phenylobacterium sp. SCN 70-31 [MEEX]
3675
3750
+
Ala
GGC
[ENA]
¡û
>W1711501726
MKRY01000100
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
7670
7745
+
Ala
GGC
[ENA]
¡û
>W1711501727
MKRY01000100
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
7837
7912
+
Ala
GGC
[ENA]
¡û
>W1711718109
MTHE01000005
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
121562
121487
-
Ala
GGC
[ENA]
¡û
>W1711718110
MTHE01000005
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
121395
121320
-
Ala
GGC
[ENA]
¡û
>W1712106198
NIVP01000024
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
24326
24251
-
Ala
GGC
[ENA]
¡û
>W1712106199
NIVP01000024
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
24159
24084
-
Ala
GGC
[ENA]
¡û
>W131221540
AUAO01000001
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
618684
618759
+
Ala
GGC
[ENA]
¡û
>WENV180018737
FTAI01000517
[FTAI] metagenome; soil
6017
5942
-
Ala
GGC
[ENA]
¢þ
>WENV180020493
FTCZ01004775
[FTCZ] metagenome; soil
4713
4788
+
Ala
GGC
[ENA]
¢þ
>WENV180022145
FTFR01000043
[FTFR] metagenome; soil
8
83
+
Ala
GGC
[ENA]
¢þ
>WENV180022156
FTFR01000828
[FTFR] metagenome; soil
1592
1667
+
Ala
GGC
[ENA]
¢þ
>WENV180023888
FTIF01003423
[FTIF] metagenome; soil
2307
2382
+
Ala
GGC
[ENA]
¢þ
>WENV180026353
FTIT01002107
[FTIT] metagenome; soil
3121
3196
+
Ala
GGC
[ENA]
¢þ
>WENV180028142
FTJA01000040
[FTJA] metagenome; soil
3214
3139
-
Ala
GGC
[ENA]
¢þ
>WENV180028315
FTJA01075198
[FTJA] metagenome; soil
656
581
-
Ala
GGC
[ENA]
¢þ
>WENV180028386
FTJA01176685
[FTJA] metagenome; soil
114
39
-
Ala
GGC
[ENA]
¢þ
>WENV180028393
FTJA01187077
[FTJA] metagenome; soil
264
189
-
Ala
GGC
[ENA]
¢þ
>WENV180030219
FTJL01367451
[FTJL] metagenome; soil
224
149
-
Ala
GGC
[ENA]
¢þ
>WENV180031943
FTJU01001855
[FTJU] metagenome; soil
7012
7087
+
Ala
GGC
[ENA]
¢þ
>WENV180035340
FTKT01267700
[FTKT] metagenome; soil
89
164
+
Ala
GGC
[ENA]
¢þ
>WENV180035462
FTKZ01020386
[FTKZ] metagenome; soil
719
644
-
Ala
GGC
[ENA]
¢þ
>WENV181379189
OFRC01049420
[OFRC] wastewater metagenome; Exp Tend CN 10WW
434
509
+
Ala
GGC
[ENA]
¢þ
>W141136730
AWGC01000013
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
141266
141341
+
Ala
GGC
[ENA]
¡û
>W141136766
AWGD01000015
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
97490
97415
-
Ala
GGC
[ENA]
¡û
>WENV181402318
OFTY01000576
[OFTY] sludge metagenome; sludge
3303
3228
-
Ala
GGC
[ENA]
¢þ
>WENV181402319
OFTY01000576
[OFTY] sludge metagenome; sludge
3136
3061
-
Ala
GGC
[ENA]
¢þ
>W141230466
BATC01000018
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
8157
8082
-
Ala
GGC
[ENA]
¡û
>C08007916
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
181059
180987
-
Ala
GGC
[Ensembl]
¡û
>WENV183697155
OUNJ010022055
[OUNJ] metagenome; soil
1346
1421
+
Ala
GGC
[ENA]
¢þ
>WENV183730846
PJTS01001313
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1526
1451
-
Ala
GGC
[ENA]
¢þ
>WENV183730847
PJTS01001313
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1358
1283
-
Ala
GGC
[ENA]
¢þ
>WENV183733434
PJTY01002031
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3929
3854
-
Ala
GGC
[ENA]
¢þ
>WENV183733435
PJTY01002031
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3761
3686
-
Ala
GGC
[ENA]
¢þ
>WENV183735508
PJUB01000024
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
157715
157640
-
Ala
GGC
[ENA]
¢þ
>WENV183735509
PJUB01000024
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
157547
157472
-
Ala
GGC
[ENA]
¢þ
>WENV183738884
PJUE01000352
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
16248
16323
+
Ala
GGC
[ENA]
¢þ
>WENV183738885
PJUE01000352
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
16416
16491
+
Ala
GGC
[ENA]
¢þ
>WENV183740366
PJUF01001458
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
8025
7950
-
Ala
GGC
[ENA]
¢þ
>WENV183740367
PJUF01001458
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7857
7782
-
Ala
GGC
[ENA]
¢þ
>WENV170003764
AGTN01442642
[AGTN] bioreactor metagenome; poplar biomass
180
255
+
Ala
GGC
[ENA]
¢þ
>WENV170004044
AGTN01544416
[AGTN] bioreactor metagenome; poplar biomass
230
155
-
Ala
GGC
[ENA]
¢þ
>WENV170593825
FUFK011028874
[FUFK] metagenome; unknown
156
81
-
Ala
GGC
[ENA]
¢þ
>WENV170595780
FUFK011968265
[FUFK] metagenome; unknown
322
247
-
Ala
GGC
[ENA]
¢þ
>WENV170645933
JQGF01001161
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
810
885
+
Ala
GGC
[ENA]
¢þ
>WENV170645934
JQGF01001161
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
977
1052
+
Ala
GGC
[ENA]
¢þ
>WENV170646021
JQGF01008890
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
524
599
+
Ala
GGC
[ENA]
¢þ
>WENV170680832
LFEF01025726
[LFEF] freshwater metagenome; waterbloom
106
31
-
Ala
GGC
[ENA]
¢þ
>WENV170707517
LNAP01023612
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1466
1391
-
Ala
GGC
[ENA]
¢þ
>C181179052
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
111438
111363
-
Ala
GGC
-
¡û
>C191005623
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
2076803
2076728
-
Ala
GGC
-
¡û
>C191094020
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
1670050
1669975
-
Ala
GGC
-
¡û
>C191094021
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
1669883
1669808
-
Ala
GGC
-
¡û
>C191134439
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
3547302
3547377
+
Ala
GGC
-
¡û
>C191134440
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
3547469
3547544
+
Ala
GGC
-
¡û
>C191159642
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
343742
343667
-
Ala
GGC
-
¡û
>C191220458
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
510047
509972
-
Ala
GGC
-
¡û
>C191220459
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
509880
509805
-
Ala
GGC
-
¡û
>W141731236
JNIX01000011
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
149414
149489
+
Ala
GGC
[ENA]
¡û
>W09133863
ACQR01000008
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
30280
30355
+
Ala
GGC
[ENA]
¡û
>W1910182696
BJNC01000021
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
14436
14511
+
Ala
GGC
[ENA]
¡û
>W1910182697
BJNC01000021
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
14603
14678
+
Ala
GGC
[ENA]
¡û
>W1910725253
MGLK01000009
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
9320
9245
-
Ala
GGC
[ENA]
¡û
>W1910743217
MHXN01000007
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 [MHXN]
275725
275800
+
Ala
GGC
[ENA]
¡û
>W1910743276
MHXO01000192
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
8018
7943
-
Ala
GGC
[ENA]
¡û
>W1911738141
QUOQ01000002
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
94263
94188
-
Ala
GGC
[ENA]
¡û
>W1810000970
BEWU01000019
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
24432
24357
-
Ala
GGC
[ENA]
¡û
>W1810503517
QBKE01000004
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
487174
487099
-
Ala
GGC
[ENA]
¡û
>W1810594078
QFYQ01000001
Alphaproteobacteria
Phenylobacterium soli LX32 [QFYQ]
447701
447626
-
Ala
GGC
[ENA]
¡û
>W1810594157
QFYS01000005
Alphaproteobacteria
Phenylobacterium kunshanense BUT-10 [QFYS]
227495
227420
-
Ala
GGC
[ENA]
¡û
>C11100678
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
2572250
2572325
+
Ala
GGC
[Ensembl]
¡û
>W11123370
ADUH01000009
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
109
34
-
Ala
GGC
[ENA]
¡û
>W11123445
ADUI01000201
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
11765
11840
+
Ala
GGC
[ENA]
¡û
>W11123446
ADUI01000201
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
11932
12007
+
Ala
GGC
[ENA]
¡û
>W1610649171
LJHU01000042
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
9284
9209
-
Ala
GGC
[ENA]
¡û
>W1610739660
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
74263
74188
-
Ala
GGC
[ENA]
¡û
>W1610913541
LSJI01000230
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
344
269
-
Ala
GGC
[ENA]
¡û
>W1610914497
LSKE01000233
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
26283
26208
-
Ala
GGC
[ENA]
¡û
>W1710576198
FOZV01000008
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
32503
32428
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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