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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46608 (44 seq.)
>W1711108822
LTUC01000044
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
17827
17740
-
Ser
TGA
[ENA]
¡û
>W1711185900
LWNU01000006
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
23787
23874
+
Ser
TGA
[ENA]
¡û
>W1711510263
MLAL01000023
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
674
587
-
Ser
TGA
[ENA]
¡û
>W1711511678
MLCQ01000010
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
18360
18275
-
Ser
TGA
[ENA]
¡û
>W1711511758
MLCR01000017
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
11396
11309
-
Ser
TGA
[ENA]
¡û
>W1711517357
MLJM01000008
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
168982
169069
+
Ser
TGA
[ENA]
¡û
>C171064729
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
2207758
2207673
-
Ser
TGA
-
¡û
>W131169245
AREP01000008
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
76112
76199
+
Ser
TGA
[ENA]
¡û
>WENV181212244
OFBN01000830
[OFBN] metagenome; hydrothermal vent
847
760
-
Ser
TGA
[ENA]
¢þ
>WENV181212327
OFBO01000512
[OFBO] metagenome; hydrothermal vent
1379
1292
-
Ser
TGA
[ENA]
¢þ
>WENV181212400
OFBP01000794
[OFBP] metagenome; hydrothermal vent
847
760
-
Ser
TGA
[ENA]
¢þ
>WENV181212482
OFBQ01000812
[OFBQ] metagenome; hydrothermal vent
847
760
-
Ser
TGA
[ENA]
¢þ
>WENV181212560
OFBR01000865
[OFBR] metagenome; hydrothermal vent
752
839
+
Ser
TGA
[ENA]
¢þ
>WENV181212634
OFBS01000802
[OFBS] metagenome; hydrothermal vent
847
760
-
Ser
TGA
[ENA]
¢þ
>WENV181212728
OFBT01001308
[OFBT] metagenome; hydrothermal vent
762
675
-
Ser
TGA
[ENA]
¢þ
>WENV182635993
OJKZ01000079
[OJKZ] metagenome; surface
50680
50767
+
Ser
TGA
[ENA]
¢þ
>WENV182636288
OJKZ01002341
[OJKZ] metagenome; surface
5562
5647
+
Ser
TGA
[ENA]
¢þ
>WENV182640397
OJLB01007263
[OJLB] metagenome; surface
1264
1351
+
Ser
TGA
[ENA]
¢þ
>WENV182641801
OJLK01001273
[OJLK] metagenome; surface
371
456
+
Ser
TGA
[ENA]
¢þ
>WENV182643101
OJLS01000820
[OJLS] metagenome; surface
4037
3950
-
Ser
TGA
[ENA]
¢þ
>WENV182643527
OJLW01000017
[OJLW] metagenome; surface
1772
1685
-
Ser
TGA
[ENA]
¢þ
>WENV182644692
OJLY01000167
[OJLY] metagenome; surface
1772
1685
-
Ser
TGA
[ENA]
¢þ
>WENV182644867
OJLY01000591
[OJLY] metagenome; surface
219
134
-
Ser
TGA
[ENA]
¢þ
>WENV182645790
OJLZ01002944
[OJLZ] metagenome; surface
905
818
-
Ser
TGA
[ENA]
¢þ
>WENV182671691
OJNM01001245
[OJNM] metagenome; surface
5842
5929
+
Ser
TGA
[ENA]
¢þ
>WENV182671764
OJNM01002194
[OJNM] metagenome; surface
3535
3620
+
Ser
TGA
[ENA]
¢þ
>C181225901
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
210339
210426
+
Ser
TGA
-
¡û
>C181226231
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
2467918
2467831
-
Ser
TGA
-
¡û
>W09127967
ACLJ01000059
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
2311
2224
-
Ser
TGA
[ENA]
¡û
>W1910225827
FMSX01000010
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
25083
25168
+
Ser
TGA
[ENA]
¡û
>W1911178995
NQMQ01000001
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
215530
215443
-
Ser
TGA
[ENA]
¡û
>W1911243338
NSGK01000009
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
4604
4517
-
Ser
TGA
[ENA]
¡û
>W1911243404
NSGL01000006
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
19235
19148
-
Ser
TGA
[ENA]
¡û
>W1911243447
NSGM01000004
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
283680
283767
+
Ser
TGA
[ENA]
¡û
>W1911243508
NSGN01000010
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
83372
83459
+
Ser
TGA
[ENA]
¡û
>W1911243549
NSGO01000007
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
90163
90250
+
Ser
TGA
[ENA]
¡û
>W1911243572
NSGP01000001
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
194901
194988
+
Ser
TGA
[ENA]
¡û
>W1911596572
PNHG01000025
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
1572
1657
+
Ser
TGA
[ENA]
¡û
>C151007248
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
160510
160595
+
Ser
TGA
[Ensembl]
¡û
>C151045484
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
128366
128453
+
Ser
TGA
[Ensembl]
¡û
>W1511644820
LDYD01000006
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
61087
61000
-
Ser
TGA
[ENA]
¡û
>W1610069810
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
103007
102922
-
Ser
TGA
[ENA]
¡û
>W1710067183
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
103007
102922
-
Ser
TGA
[ENA]
¡û
>W1710552148
FOGQ01000007
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
45776
45863
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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