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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46673 (30 seq.)
>W1711066588
LSCZ01000005
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
63263
63350
+
Ser
TGA
[ENA]
¡û
>W1711080554
LSRB01000082
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
71298
71211
-
Ser
TGA
[ENA]
¡û
>W1711082146
LSTQ01000023
Actinomycetota
Corynebacterium stationis [LSTQ]
274259
274172
-
Ser
TGA
[ENA]
¡û
>W1711096416
LTHS01000055
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
63254
63341
+
Ser
TGA
[ENA]
¡û
>W1711099156
LTKF01000113
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
17440
17353
-
Ser
TGA
[ENA]
¡û
>W1711108502
LTTU01000060
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
68462
68375
-
Ser
TGA
[ENA]
¡û
>W1711109356
LTUP01000010
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
63260
63347
+
Ser
TGA
[ENA]
¡û
>W1711187686
LWPR01000031
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
40157
40070
-
Ser
TGA
[ENA]
¡û
>C171001810
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
224526
224613
+
Ser
TGA
-
¡û
>C171001909
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
193666
193753
+
Ser
TGA
-
¡û
>C171002065
CP009249
Actinomycetota
Corynebacterium phocae M408/89/1 [CP009249]
163708
163793
+
Ser
TGA
-
¡û
>C171002116
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
220737
220824
+
Ser
TGA
-
¡û
>C171098493
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
311118
311205
+
Ser
TGA
-
¡û
>C171101822
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
29037
29124
+
Ser
TGA
-
¡û
>WENV180346476
OBLN01110655
[OBLN] sediment metagenome; sediment
360
273
-
Ser
TGA
[ENA]
¢þ
>WENV183511371
OMJG01000109
[OMJG] food metagenome; Cotija cheese
48437
48524
+
Ser
TGA
[ENA]
¢þ
>C191163626
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
172525
172610
+
Ser
TGA
-
¡û
>W1910182631
BJNB01000010
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
89
2
-
Ser
TGA
[ENA]
¡û
>W1910442346
FWFE01000018
Actinomycetota
Corynebacterium casei JB4 [FWFE]
15796
15883
+
Ser
TGA
[ENA]
¡û
>W1810326729
PUGE01000005
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
207810
207897
+
Ser
TGA
[ENA]
¡û
>C151005915
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
291854
291941
+
Ser
TGA
[Ensembl]
¡û
>W10116389
ADNS01000032
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
5895
5808
-
Ser
TGA
[ENA]
¡û
>W11121058
ADNS01000032
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
5895
5808
-
Ser
TGA
[ENA]
¡û
>C161070404
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
206361
206448
+
Ser
TGA
[Ensembl]
¡û
>W121127423
CAFW01000103
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
5004
4917
-
Ser
TGA
[ENA]
¡û
>W1610507467
FLTI01000014
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
32158
32071
-
Ser
TGA
[ENA]
¡û
>W1610907158
LSCZ01000005
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
63263
63350
+
Ser
TGA
[ENA]
¡û
>W1610919421
LSRB01000082
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
71298
71211
-
Ser
TGA
[ENA]
¡û
>W1610920931
LSTQ01000023
Actinomycetota
Corynebacterium stationis [LSTQ]
274259
274172
-
Ser
TGA
[ENA]
¡û
>W1710499685
FLTI01000014
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
32158
32071
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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