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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4668 (16 seq.)
>C171085354
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
1268870
1268963
+
Ser
GCT
-
¡û
>C171130498
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
247895
247988
+
Ser
GCT
-
¡û
>C011141
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
2372437
2372344
-
Ser
GCT
[Ensembl]
¡û
>WENV180027076
FTIV01199344
[FTIV] metagenome; soil
193
100
-
Ser
GCT
[ENA]
¢þ
>WENV180028339
FTJA01110997
[FTJA] metagenome; soil
97
4
-
Ser
GCT
[ENA]
¢þ
>WENV180033693
FTKL01011918
[FTKL] metagenome; soil
45
138
+
Ser
GCT
[ENA]
¢þ
>WENV180261566
OBEQ011307354
[OBEQ] groundwater metagenome; groundwater
801
708
-
Ser
GCT
[ENA]
¢þ
>WENV180344482
OBLL01006375
[OBLL] soil metagenome; soil
210
303
+
Ser
GCT
[ENA]
¢þ
>W141093960
AVCC01000023
Betaproteobacteria
Herminiimonas sp. CN [AVCC]
1834
1927
+
Ser
GCT
[ENA]
¡û
>WENV170639417
JFJP01002521
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
8611
8704
+
Ser
GCT
[ENA]
¢þ
>W1910700091
MESE01000094
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
122384
122477
+
Ser
GCT
[ENA]
¡û
>C161053640
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
2068169
2068262
+
Ser
GCT
-
¡û
>C161053736
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
2068507
2068600
+
Ser
GCT
[Ensembl]
¡û
>W1610070428
BCTG01000006
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
165255
165348
+
Ser
GCT
[ENA]
¡û
>W1710067801
BCTG01000006
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
165255
165348
+
Ser
GCT
[ENA]
¡û
>W1710556452
FOKF01000018
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
90114
90207
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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