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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46684 (14 seq.)
>WENV170967824
MTKW01003679
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
36230
36318
+
Ser
TGA
[ENA]
¢þ
>W141619938
JJMM01000021
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
5898
5810
-
Ser
TGA
[ENA]
¡û
>W141619960
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
108769
108681
-
Ser
TGA
[ENA]
¡û
>W141619975
JJMM01000024
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
241
153
-
Ser
TGA
[ENA]
¡û
>W1910211444
FMDO01000023
Bacillota
Proteiniborus sp. DW1 [FMDO]
375
463
+
Ser
TGA
[ENA]
¡û
>C151024057
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
54464
54552
+
Ser
TGA
[Ensembl]
¡û
>C151024081
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
194273
194361
+
Ser
TGA
[Ensembl]
¡û
>W1511705897
LGSS01000023
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
678
766
+
Ser
TGA
[ENA]
¡û
>W1511705925
LGSS01000073
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
261
173
-
Ser
TGA
[ENA]
¡û
>C131003078
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1009134
1009222
+
Ser
TGA
[Ensembl]
¡û
>C131003094
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1010787
1010875
+
Ser
TGA
[Ensembl]
¡û
>C131003114
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
3016216
3016128
-
Ser
TGA
[Ensembl]
¡û
>W1710594537
FSRH01000025
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
7897
7809
-
Ser
TGA
[ENA]
¡û
>W1710594553
FSRH01000033
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
1145
1057
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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