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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.466895 (151 seq.)
>WENV180129054
OATB01022012
[OATB] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180193830
OAZW01018166
[OAZW] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180197014
OBAA01028956
[OBAA] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180200301
OBAE01024972
[OBAE] human gut metagenome; human gut
812
737
-
Ala
TGC
[ENA]
¢þ
>WENV180211765
OBAM01021344
[OBAM] human gut metagenome; human gut
1079
1004
-
Ala
TGC
[ENA]
¢þ
>WENV180214053
OBAO01029384
[OBAO] human gut metagenome; human gut
180
105
-
Ala
TGC
[ENA]
¢þ
>WENV180218365
OBAR01039658
[OBAR] human gut metagenome; human gut
827
902
+
Ala
TGC
[ENA]
¢þ
>WENV180220393
OBAS01058839
[OBAS] human gut metagenome; human gut
383
458
+
Ala
TGC
[ENA]
¢þ
>WENV180224446
OBBJ01064497
[OBBJ] human gut metagenome; human gut
151
76
-
Ala
TGC
[ENA]
¢þ
>WENV180281325
OBIA01007609
[OBIA] human gut metagenome; human gut
2199
2124
-
Ala
TGC
[ENA]
¢þ
>WENV180289023
OBIM01040052
[OBIM] human gut metagenome; human gut
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180303822
OBJF01121595
[OBJF] human gut metagenome; feces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180407502
OBUQ01011827
[OBUQ] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180430422
OBWF01003840
[OBWF] human gut metagenome; faeces
1995
2070
+
Ala
TGC
[ENA]
¢þ
>WENV180432694
OBWI01036389
[OBWI] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180464842
OBYD01037106
[OBYD] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180465675
OBYF01004713
[OBYF] human gut metagenome; faeces
2197
2122
-
Ala
TGC
[ENA]
¢þ
>WENV180467619
OBYI01001405
[OBYI] human gut metagenome; faeces
254
329
+
Ala
TGC
[ENA]
¢þ
>WENV180488995
OBZR01004551
[OBZR] human gut metagenome; faeces
2199
2124
-
Ala
TGC
[ENA]
¢þ
>WENV180509608
OCAV01057663
[OCAV] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180518356
OCHD01028407
[OCHD] human gut metagenome; human gut
825
900
+
Ala
TGC
[ENA]
¢þ
>WENV180531271
OCHK01042376
[OCHK] human gut metagenome; human gut
827
902
+
Ala
TGC
[ENA]
¢þ
>WENV180545167
OCIS01057974
[OCIS] human gut metagenome; human gut
127
202
+
Ala
TGC
[ENA]
¢þ
>WENV180558306
OCJY01027190
[OCJY] human gut metagenome; human gut
23
98
+
Ala
TGC
[ENA]
¢þ
>WENV180605071
OCPS01086587
[OCPS] human gut metagenome; human gut
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180617884
OCQA01075727
[OCQA] human gut metagenome; human gut
386
461
+
Ala
TGC
[ENA]
¢þ
>WENV180630114
OCQT01003870
[OCQT] human gut metagenome; human gut
150
225
+
Ala
TGC
[ENA]
¢þ
>WENV180711178
ODFM01072238
[ODFM] human metagenome; G_DNA_Stool
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180756328
ODHV01008426
[ODHV] human metagenome; G_DNA_Stool
2199
2124
-
Ala
TGC
[ENA]
¢þ
>WENV180761526
ODHZ01013880
[ODHZ] human metagenome; G_DNA_Stool
2533
2458
-
Ala
TGC
[ENA]
¢þ
>WENV180800166
ODJC01102800
[ODJC] human metagenome; G_DNA_Stool
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180812485
ODJN01027866
[ODJN] human metagenome; G_DNA_Stool
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180867997
ODLK01049931
[ODLK] human metagenome; G_DNA_Stool
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180884536
ODME01000007
[ODME] human metagenome; G_DNA_Stool
197923
197998
+
Ala
TGC
[ENA]
¢þ
>WENV180914233
ODSV01032384
[ODSV] human metagenome; G_DNA_Stool
179
104
-
Ala
TGC
[ENA]
¢þ
>WENV180919005
ODTG01009409
[ODTG] human metagenome; G_DNA_Stool
2199
2124
-
Ala
TGC
[ENA]
¢þ
>WENV180947175
ODUE01043577
[ODUE] human metagenome; G_DNA_Stool
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV180957232
ODUK01020298
[ODUK] human metagenome; G_DNA_Stool
774
699
-
Ala
TGC
[ENA]
¢þ
>WENV180996090
ODVR01087533
[ODVR] human metagenome; G_DNA_Stool
191
266
+
Ala
TGC
[ENA]
¢þ
>WENV181018492
ODWT01041467
[ODWT] human metagenome; G_DNA_Stool
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV181028703
ODXE01009990
[ODXE] human metagenome; G_DNA_Stool
2199
2124
-
Ala
TGC
[ENA]
¢þ
>WENV181072985
OEAN01086642
[OEAN] human metagenome; G_DNA_Stool
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV181089167
OEBA01014965
[OEBA] human metagenome; G_DNA_Stool
2199
2124
-
Ala
TGC
[ENA]
¢þ
>WENV181100757
OECJ01003760
[OECJ] human metagenome; G_DNA_Stool
738
663
-
Ala
TGC
[ENA]
¢þ
>WENV181161610
OEIM01003148
[OEIM] human gut metagenome; human gut
1766
1841
+
Ala
TGC
[ENA]
¢þ
>WENV181337533
OFME01007475
[OFME] human gut metagenome; human gut
2198
2123
-
Ala
TGC
[ENA]
¢þ
>WENV181340237
OFMG01038490
[OFMG] human gut metagenome; human gut
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV181454639
OGED01016741
[OGED] metagenome; Human gut stool
813
738
-
Ala
TGC
[ENA]
¢þ
>WENV181462547
OGEN01009597
[OGEN] metagenome; Human gut stool
258
333
+
Ala
TGC
[ENA]
¢þ
>WENV181485847
OGFM01022940
[OGFM] metagenome; Human gut stool
747
672
-
Ala
TGC
[ENA]
¢þ
>WENV181533680
OGHR01013193
[OGHR] metagenome; Human gut stool
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV181548188
OGIJ01088346
[OGIJ] metagenome; Human gut stool
571
496
-
Ala
TGC
[ENA]
¢þ
>WENV181623583
OGMI01001734
[OGMI] metagenome; Human gut stool
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV181639543
OGND01005603
[OGND] metagenome; Human gut stool
130
205
+
Ala
TGC
[ENA]
¢þ
>WENV181735968
OGQG01028218
[OGQG] human gut metagenome; faeces
699
774
+
Ala
TGC
[ENA]
¢þ
>WENV181745546
OGQM01046634
[OGQM] human gut metagenome; faeces
217
292
+
Ala
TGC
[ENA]
¢þ
>WENV181754300
OGQR01010752
[OGQR] human gut metagenome; faeces
697
772
+
Ala
TGC
[ENA]
¢þ
>WENV181783923
OGRL01016566
[OGRL] human gut metagenome; faeces
293
368
+
Ala
TGC
[ENA]
¢þ
>WENV181816795
OGTL01012782
[OGTL] human gut metagenome; faeces
2198
2123
-
Ala
TGC
[ENA]
¢þ
>WENV181873279
OGWZ01057060
[OGWZ] human gut metagenome; faeces
140
215
+
Ala
TGC
[ENA]
¢þ
>WENV181874667
OGXA01049390
[OGXA] human gut metagenome; faeces
179
104
-
Ala
TGC
[ENA]
¢þ
>WENV181884135
OGXI01046731
[OGXI] human gut metagenome; faeces
748
673
-
Ala
TGC
[ENA]
¢þ
>WENV181900758
OGXV01045079
[OGXV] human gut metagenome; faeces
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV181917396
OGYG01013059
[OGYG] human gut metagenome; faeces
156
231
+
Ala
TGC
[ENA]
¢þ
>WENV181924937
OGYL01081475
[OGYL] human gut metagenome; faeces
489
414
-
Ala
TGC
[ENA]
¢þ
>WENV181931922
OGYQ01010633
[OGYQ] human gut metagenome; faeces
1337
1262
-
Ala
TGC
[ENA]
¢þ
>WENV181932689
OGYR01005524
[OGYR] human gut metagenome; faeces
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV181949865
OGZF01015049
[OGZF] human gut metagenome; faeces
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV181959509
OGZM01025107
[OGZM] human gut metagenome; faeces
692
767
+
Ala
TGC
[ENA]
¢þ
>WENV181992427
OHAQ01057030
[OHAQ] human gut metagenome; faeces
73
148
+
Ala
TGC
[ENA]
¢þ
>WENV182095508
OHHL01031450
[OHHL] human gut metagenome; feces
525
450
-
Ala
TGC
[ENA]
¢þ
>WENV182096533
OHHN01004924
[OHHN] human gut metagenome; feces
259
334
+
Ala
TGC
[ENA]
¢þ
>WENV182128422
OHJY01002671
[OHJY] human gut metagenome; feces
695
770
+
Ala
TGC
[ENA]
¢þ
>WENV182134903
OHKI01002694
[OHKI] human gut metagenome; feces
694
769
+
Ala
TGC
[ENA]
¢þ
>WENV182167174
OHMR01001078
[OHMR] human gut metagenome; feces
3577
3502
-
Ala
TGC
[ENA]
¢þ
>WENV182232524
OHRO01002553
[OHRO] human gut metagenome; feces
3661
3586
-
Ala
TGC
[ENA]
¢þ
>WENV182252340
OHSX01019820
[OHSX] human gut metagenome; feces
208
133
-
Ala
TGC
[ENA]
¢þ
>WENV182276076
OHUN01057813
[OHUN] human gut metagenome; feces
73
148
+
Ala
TGC
[ENA]
¢þ
>WENV182299978
OHWL01030417
[OHWL] human gut metagenome; feces
3
78
+
Ala
TGC
[ENA]
¢þ
>WENV182324046
OHYQ01019113
[OHYQ] human gut metagenome; feces
129
204
+
Ala
TGC
[ENA]
¢þ
>WENV182365546
OICJ01001105
[OICJ] human gut metagenome; feces
4011
3936
-
Ala
TGC
[ENA]
¢þ
>WENV182445771
OIKY01002370
[OIKY] human gut metagenome; human gut
165
240
+
Ala
TGC
[ENA]
¢þ
>WENV182449892
OILT01001512
[OILT] human gut metagenome; human gut
2183
2108
-
Ala
TGC
[ENA]
¢þ
>WENV182451790
OIMB01001213
[OIMB] human gut metagenome; human gut
693
768
+
Ala
TGC
[ENA]
¢þ
>WENV182456327
OIMX01004624
[OIMX] human gut metagenome; human gut
838
763
-
Ala
TGC
[ENA]
¢þ
>WENV182460274
OINO01002205
[OINO] human gut metagenome; human gut
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV182462459
OINY01002208
[OINY] human gut metagenome; human gut
2183
2108
-
Ala
TGC
[ENA]
¢þ
>WENV182465147
OIOL01023068
[OIOL] human gut metagenome; human gut
20
95
+
Ala
TGC
[ENA]
¢þ
>WENV182468441
OIOY01002149
[OIOY] human gut metagenome; human gut
2183
2108
-
Ala
TGC
[ENA]
¢þ
>WENV182471704
OIPM01001808
[OIPM] human gut metagenome; human gut
260
335
+
Ala
TGC
[ENA]
¢þ
>WENV182474266
OIPV01001056
[OIPV] human gut metagenome; human gut
100
175
+
Ala
TGC
[ENA]
¢þ
>WENV182478483
OIQO01002485
[OIQO] human gut metagenome; human gut
2116
2041
-
Ala
TGC
[ENA]
¢þ
>WENV182504484
OIUU01001956
[OIUU] human gut metagenome; human gut
15
90
+
Ala
TGC
[ENA]
¢þ
>WENV182519451
OIWP01014470
[OIWP] human gut metagenome; faeces
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV182601429
OJJI01021146
[OJJI] metagenome; faeces
289
364
+
Ala
TGC
[ENA]
¢þ
>WENV182666719
OJNH01055650
[OJNH] human gut metagenome; feces
739
664
-
Ala
TGC
[ENA]
¢þ
>WENV182670222
OJNK01024053
[OJNK] human gut metagenome; human gut
748
673
-
Ala
TGC
[ENA]
¢þ
>WENV182677148
OJNR01005544
[OJNR] human gut metagenome; human gut
191
266
+
Ala
TGC
[ENA]
¢þ
>WENV182697250
OJOL01002377
[OJOL] human gut metagenome; human gut
692
767
+
Ala
TGC
[ENA]
¢þ
>WENV182708836
OJPA01006465
[OJPA] human gut metagenome; stool sample
1786
1711
-
Ala
TGC
[ENA]
¢þ
>WENV182709676
OJPB01017835
[OJPB] human gut metagenome; stool sample
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV182766460
OJRT01011821
[OJRT] human gut metagenome; stool sample
762
687
-
Ala
TGC
[ENA]
¢þ
>WENV182867247
OKRR01008970
[OKRR] human gut metagenome; faeces
2195
2120
-
Ala
TGC
[ENA]
¢þ
>WENV182869592
OKRT01009104
[OKRT] human gut metagenome; faeces
258
333
+
Ala
TGC
[ENA]
¢þ
>WENV182879635
OKRZ01020727
[OKRZ] human gut metagenome; faeces
259
334
+
Ala
TGC
[ENA]
¢þ
>WENV182896774
OKSO01002428
[OKSO] human gut metagenome; feces
4348
4273
-
Ala
TGC
[ENA]
¢þ
>WENV182934847
OKUY01005888
[OKUY] human gut metagenome; feces
763
688
-
Ala
TGC
[ENA]
¢þ
>WENV182955371
OKWC01020416
[OKWC] human gut metagenome; human gut
305
230
-
Ala
TGC
[ENA]
¢þ
>WENV182956708
OKWF01010973
[OKWF] human gut metagenome; human gut
481
556
+
Ala
TGC
[ENA]
¢þ
>WENV182958527
OKWH01017749
[OKWH] human gut metagenome; human gut
106
31
-
Ala
TGC
[ENA]
¢þ
>WENV182975167
OKXT01012016
[OKXT] human gut metagenome; human gut
556
481
-
Ala
TGC
[ENA]
¢þ
>WENV182979061
OKYK01005930
[OKYK] human gut metagenome; human gut
1085
1010
-
Ala
TGC
[ENA]
¢þ
>WENV182986991
OLAA01001444
[OLAA] human gut metagenome; human gut
144
219
+
Ala
TGC
[ENA]
¢þ
>WENV182996961
OLBO01002053
[OLBO] human gut metagenome; human gut
2183
2108
-
Ala
TGC
[ENA]
¢þ
>WENV183002731
OLCP01002369
[OLCP] human gut metagenome; human gut
1268
1193
-
Ala
TGC
[ENA]
¢þ
>WENV183017231
OLEU01005302
[OLEU] human gut metagenome; human gut
1125
1050
-
Ala
TGC
[ENA]
¢þ
>WENV183121041
OLNU01039016
[OLNU] human gut metagenome; faeces
695
770
+
Ala
TGC
[ENA]
¢þ
>WENV183356930
OLXF01002747
[OLXF] human gut metagenome; feces
5962
5887
-
Ala
TGC
[ENA]
¢þ
>WENV183371263
OLXV01013603
[OLXV] human gut metagenome; feces
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV183417328
OMAU01002794
[OMAU] human gut metagenome; feces
988
913
-
Ala
TGC
[ENA]
¢þ
>WENV183421310
OMBB01006166
[OMBB] human gut metagenome; feces
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV183422913
OMBF01010436
[OMBF] human gut metagenome; feces
259
334
+
Ala
TGC
[ENA]
¢þ
>WENV183492447
OMGH01024778
[OMGH] human gut metagenome; human gut
179
104
-
Ala
TGC
[ENA]
¢þ
>WENV183521319
OMNU01003355
[OMNU] human gut metagenome; feces
5723
5648
-
Ala
TGC
[ENA]
¢þ
>WENV183526999
ONZV01032420
[ONZV] human gut metagenome; human gut
179
104
-
Ala
TGC
[ENA]
¢þ
>WENV183553514
OOBK01008302
[OOBK] human gut metagenome; human gut
265
340
+
Ala
TGC
[ENA]
¢þ
>WENV170027187
CDTY01021576
[CDTY] gut metagenome; human stools
437
512
+
Ala
TGC
[ENA]
¢þ
>WENV170038599
CDYR01014740
[CDYR] gut metagenome; human stools
1915
1990
+
Ala
TGC
[ENA]
¢þ
>WENV170075087
CDZT01021469
[CDZT] gut metagenome; human stools
4805
4730
-
Ala
TGC
[ENA]
¢þ
>WENV170076585
CDZU01007743
[CDZU] gut metagenome; human stools
105188
105113
-
Ala
TGC
[ENA]
¢þ
>WENV170086332
CEAC01004879
[CEAC] gut metagenome; human stools
3550
3475
-
Ala
TGC
[ENA]
¢þ
>WENV170093890
CEAH01044279
[CEAH] gut metagenome; human stools
592
517
-
Ala
TGC
[ENA]
¢þ
>WENV170097263
CEAL01019230
[CEAL] gut metagenome; human stools
241
316
+
Ala
TGC
[ENA]
¢þ
>WENV170102848
CEAX01027088
[CEAX] gut metagenome; human stools
3591
3516
-
Ala
TGC
[ENA]
¢þ
>WENV170104951
CEAZ01055979
[CEAZ] gut metagenome; human stools
73973
74048
+
Ala
TGC
[ENA]
¢þ
>WENV170107923
CEBY01065346
[CEBY] gut metagenome; human stools
5481
5556
+
Ala
TGC
[ENA]
¢þ
>C181166296
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
110587
110662
+
Ala
TGC
-
¡û
>C181166369
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
110895
110970
+
Ala
TGC
-
¡û
>C191006400
AP019004
Bacillota
Phascolarctobacterium faecium JCM 30894 [AP019004]
2125240
2125165
-
Ala
TGC
-
¡û
>C191006402
AP019004
Bacillota
Phascolarctobacterium faecium JCM 30894 [AP019004]
2048061
2047986
-
Ala
TGC
-
¡û
>C191219473
LR215982
Bacillota
Phascolarctobacterium faecium [LR215982]
515264
515189
-
Ala
TGC
-
¡û
>C191219475
LR215982
Bacillota
Phascolarctobacterium faecium [LR215982]
440611
440536
-
Ala
TGC
-
¡û
>W1511579950
LARH01000134
Bacillota
Carnobacterium sp. N15.MGS-207 [LARH]
177
102
-
Ala
TGC
[ENA]
¡û
>W1610073916
BCWE01000044
Bacillota
Desulfolucanica intricata intricatum [BCWE]
123
48
-
Ala
TGC
[ENA]
¡û
>W1610073918
BCWE01000045
Bacillota
Desulfolucanica intricata intricatum [BCWE]
123
48
-
Ala
TGC
[ENA]
¡û
>W1610073921
BCWE01000057
Bacillota
Desulfolucanica intricata intricatum [BCWE]
135
60
-
Ala
TGC
[ENA]
¡û
>W1710071034
BCWE01000044
Bacillota
Desulfolucanica intricata intricatum [BCWE]
123
48
-
Ala
TGC
[ENA]
¡û
>W1710071036
BCWE01000045
Bacillota
Desulfolucanica intricata intricatum [BCWE]
123
48
-
Ala
TGC
[ENA]
¡û
>W1710071039
BCWE01000057
Bacillota
Desulfolucanica intricata intricatum [BCWE]
135
60
-
Ala
TGC
[ENA]
¡û
>W1710084370
BDLQ01000135
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
448
523
+
Ala
TGC
[ENA]
¡û
>W1710084427
BDLR01000128
Bacillota
Carboxydocella sp. JDF658 [BDLR]
337
412
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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