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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4669 (37 seq.)
>W1710854933
LLXX01000062
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
4873
4966
+
Ser
GCT
[ENA]
¡û
>W1710855009
LLXY01000232
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
109165
109072
-
Ser
GCT
[ENA]
¡û
>W1710855052
LLXZ01000112
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
26566
26473
-
Ser
GCT
[ENA]
¡û
>W1710855115
LLYA01000170
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
164632
164539
-
Ser
GCT
[ENA]
¡û
>W1710855162
LLYB01000110
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
6480
6573
+
Ser
GCT
[ENA]
¡û
>W1711317187
MAXB01000100
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
25851
25758
-
Ser
GCT
[ENA]
¡û
>W1711317232
MAXC01000033
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
163715
163622
-
Ser
GCT
[ENA]
¡û
>W1711501362
MKRN01000080
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
903
810
-
Ser
GCT
[ENA]
¡û
>W1711502272
MKSM01000141
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
38168
38075
-
Ser
GCT
[ENA]
¡û
>W1711795370
MWPQ01000039
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
114784
114877
+
Ser
GCT
[ENA]
¡û
>C014930
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2521326
2521419
+
Ser
GCT
[Ensembl]
¡û
>C015366
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
2121035
2121128
+
Ser
GCT
[Ensembl]
¡û
>w012989
AAMY01000007
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
12684
12779
+
Ser
GCT
[ENA]
¡û
>WENV180344972
OBLL01425911
[OBLL] soil metagenome; soil
126
33
-
Ser
GCT
[ENA]
¢þ
>WENV181166626
OEIU01000839
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
18469
18562
+
Ser
GCT
[ENA]
¢þ
>W141151085
AXAU01000001
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
213189
213096
-
Ser
GCT
[ENA]
¡û
>WENV183674744
ORJL011426956
[ORJL] groundwater metagenome; groundwater
5602
5695
+
Ser
GCT
[ENA]
¢þ
>WENV170705696
LNAP01000136
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
61409
61502
+
Ser
GCT
[ENA]
¢þ
>WENV170709700
LNFM01000600
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
158841
158748
-
Ser
GCT
[ENA]
¢þ
>WENV170961866
MLJW01003220
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1450
1543
+
Ser
GCT
[ENA]
¢þ
>W09103029
AAIS01000006
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
104934
104841
-
Ser
GCT
[ENA]
¡û
>C191171946
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
2138721
2138814
+
Ser
GCT
-
¡û
>W1910182863
BJNF01000097
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
597
690
+
Ser
GCT
[ENA]
¡û
>W1810395571
PYCM01000734
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
1445
1538
+
Ser
GCT
[ENA]
¡û
>W1810395609
PYCN01000010
Alphaproteobacteria
Bradyrhizobium algeriense RST91 [PYCN]
142507
142600
+
Ser
GCT
[ENA]
¡û
>C161001642
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
1809607
1809700
+
Ser
GCT
[Ensembl]
¡û
>C161048022
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
3212189
3212096
-
Ser
GCT
-
¡û
>C161097217
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
3833053
3832960
-
Ser
GCT
[Ensembl]
¡û
>C161108100
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
2610420
2610327
-
Ser
GCT
[Ensembl]
¡û
>W1610717274
LLXX01000062
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
4873
4966
+
Ser
GCT
[ENA]
¡û
>W1610717350
LLXY01000232
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
109165
109072
-
Ser
GCT
[ENA]
¡û
>W1610717393
LLXZ01000112
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
26566
26473
-
Ser
GCT
[ENA]
¡û
>W1610717456
LLYA01000170
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
164632
164539
-
Ser
GCT
[ENA]
¡û
>W1610717503
LLYB01000110
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
6480
6573
+
Ser
GCT
[ENA]
¡û
>W1611061257
MAXB01000100
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
25851
25758
-
Ser
GCT
[ENA]
¡û
>W1611061302
MAXC01000033
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
163715
163622
-
Ser
GCT
[ENA]
¡û
>W1710594264
FSRD01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
6836077
6835984
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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