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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467208 (94 seq.)
>W131158399
AQUA01000004
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
108529
108602
+
Arg
CCT
[ENA]
¡û
>W131158436
AQUB01000021
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
5262
5335
+
Arg
CCT
[ENA]
¡û
>W131162936
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
232969
233042
+
Arg
CCT
[ENA]
¡û
>WENV016741
AACY020469099
Marine microbial communities from Global Ocean Sampling (GOS)
148
223
+
Arg
CCT
[ENA]
>WENV180110480
OAPN01000014
[OAPN] marine metagenome; 2011
8798
8871
+
Arg
CCT
[ENA]
¢þ
>WENV180110811
OAPN01007524
[OAPN] marine metagenome; 2011
1007
934
-
Arg
CCT
[ENA]
¢þ
>WENV180111783
OAPN01179764
[OAPN] marine metagenome; 2011
1
74
+
Arg
CCT
[ENA]
¢þ
>WENV180114044
OAPR01120145
[OAPR] marine metagenome; seawater
237
164
-
Arg
CCT
[ENA]
¢þ
>WENV180356823
OBNL01039350
[OBNL] marine metagenome; ENVO:00002010
95
168
+
Arg
CCT
[ENA]
¢þ
>WENV180357268
OBNN01000312
[OBNN] marine metagenome; Coastal water
2818
2745
-
Arg
CCT
[ENA]
¢þ
>WENV180377161
OBON01001693
[OBON] marine metagenome; sea water
1
74
+
Arg
CCT
[ENA]
¢þ
>WENV181368342
OFQL01000901
[OFQL] freshwater metagenome; Freshwater Lake
28
101
+
Arg
CCT
[ENA]
¢þ
>WENV181368379
OFQL01001658
[OFQL] freshwater metagenome; Freshwater Lake
239
166
-
Arg
CCT
[ENA]
¢þ
>WENV181368819
OFQN01001017
[OFQN] freshwater metagenome; Freshwater Lake
769
842
+
Arg
CCT
[ENA]
¢þ
>WENV181369526
OFQP01006652
[OFQP] freshwater metagenome; Freshwater Lake
72
145
+
Arg
CCT
[ENA]
¢þ
>WENV181369691
OFQP01022664
[OFQP] freshwater metagenome; Freshwater Lake
109
182
+
Arg
CCT
[ENA]
¢þ
>WENV181370003
OFQR01005374
[OFQR] freshwater metagenome; Freshwater Lake
47
120
+
Arg
CCT
[ENA]
¢þ
>WENV181370057
OFQR01009449
[OFQR] freshwater metagenome; Freshwater Lake
696
623
-
Arg
CCT
[ENA]
¢þ
>WENV181370198
OFQS01000444
[OFQS] freshwater metagenome; Freshwater Lake
5494
5421
-
Arg
CCT
[ENA]
¢þ
>WENV181370228
OFQS01000929
[OFQS] freshwater metagenome; Freshwater Lake
3490
3563
+
Arg
CCT
[ENA]
¢þ
>WENV181370283
OFQS01002180
[OFQS] freshwater metagenome; Freshwater Lake
1988
2061
+
Arg
CCT
[ENA]
¢þ
>WENV181370439
OFQS01013149
[OFQS] freshwater metagenome; Freshwater Lake
4
77
+
Arg
CCT
[ENA]
¢þ
>WENV181370837
OFQT01019058
[OFQT] freshwater metagenome; Freshwater Lake
444
371
-
Arg
CCT
[ENA]
¢þ
>WENV181377412
OFRA01009012
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1152
1079
-
Arg
CCT
[ENA]
¢þ
>WENV181377824
OFRA01035664
[OFRA] wastewater metagenome; Lake Maggiore Verbania
869
796
-
Arg
CCT
[ENA]
¢þ
>WENV181379701
OFRD01006314
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2305
2378
+
Arg
CCT
[ENA]
¢þ
>WENV181384203
OFRH01035732
[OFRH] wastewater metagenome; Exp Tend NO 100WW
514
441
-
Arg
CCT
[ENA]
¢þ
>WENV181384784
OFRI01010116
[OFRI] wastewater metagenome; Exp Tend VB 90WW
887
812
-
Arg
CCT
[ENA]
¢þ
>WENV181386065
OFRL01000501
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
7184
7111
-
Arg
CCT
[ENA]
¢þ
>WENV181395784
OFSB01003239
[OFSB] freshwater metagenome; Freshwater Lake
1220
1145
-
Arg
CCT
[ENA]
¢þ
>WENV181395794
OFSB01004474
[OFSB] freshwater metagenome; Freshwater Lake
1034
961
-
Arg
CCT
[ENA]
¢þ
>WENV181395808
OFSB01005528
[OFSB] freshwater metagenome; Freshwater Lake
832
907
+
Arg
CCT
[ENA]
¢þ
>WENV181400240
OFSF01003018
[OFSF] wastewater metagenome; Exp Tend VB 100WW
2347
2420
+
Arg
CCT
[ENA]
¢þ
>WENV181400666
OFSF01016987
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1385
1312
-
Arg
CCT
[ENA]
¢þ
>WENV181400687
OFSF01018380
[OFSF] wastewater metagenome; Exp Tend VB 100WW
629
556
-
Arg
CCT
[ENA]
¢þ
>WENV181400952
OFSF01036351
[OFSF] wastewater metagenome; Exp Tend VB 100WW
867
940
+
Arg
CCT
[ENA]
¢þ
>WENV181401009
OFSF01041749
[OFSF] wastewater metagenome; Exp Tend VB 100WW
698
773
+
Arg
CCT
[ENA]
¢þ
>WENV181401043
OFSF01045658
[OFSF] wastewater metagenome; Exp Tend VB 100WW
764
837
+
Arg
CCT
[ENA]
¢þ
>WENV181401309
OFSF01117049
[OFSF] wastewater metagenome; Exp Tend VB 100WW
6
79
+
Arg
CCT
[ENA]
¢þ
>WENV181836107
OGVJ01000793
[OGVJ] freshwater metagenome; freshwater
3614
3541
-
Arg
CCT
[ENA]
¢þ
>WENV181836483
OGVJ01008470
[OGVJ] freshwater metagenome; freshwater
1132
1205
+
Arg
CCT
[ENA]
¢þ
>WENV181836590
OGVJ01013673
[OGVJ] freshwater metagenome; freshwater
859
786
-
Arg
CCT
[ENA]
¢þ
>WENV181856181
OGWM01032260
[OGWM] freshwater metagenome; freshwater
281
208
-
Arg
CCT
[ENA]
¢þ
>W141202928
AZHS01000009
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
7573
7646
+
Arg
CCT
[ENA]
¡û
>WENV002014
AACY020056649
Marine microbial communities from Global Ocean Sampling (GOS)
798
723
-
Arg
CCT
[ENA]
>WENV170571747
FLOH01000288
[FLOH] marine metagenome; water
6607
6680
+
Arg
CCT
[ENA]
¢þ
>WENV170601957
FUWD010203618
[FUWD] metagenome; unknown
183
258
+
Arg
CCT
[ENA]
¢þ
>WENV170604285
FUWD010382522
[FUWD] metagenome; unknown
259
334
+
Arg
CCT
[ENA]
¢þ
>WENV170620444
FUWD013031779
[FUWD] metagenome; unknown
1279
1206
-
Arg
CCT
[ENA]
¢þ
>WENV170622118
FUWD013088045
[FUWD] metagenome; unknown
657
730
+
Arg
CCT
[ENA]
¢þ
>WENV170625443
FUWD013197666
[FUWD] metagenome; unknown
1646
1721
+
Arg
CCT
[ENA]
¢þ
>WENV170625766
FUWD013205428
[FUWD] metagenome; unknown
358
431
+
Arg
CCT
[ENA]
¢þ
>WENV170628587
FUWD013249276
[FUWD] metagenome; unknown
1279
1206
-
Arg
CCT
[ENA]
¢þ
>WENV170630319
FUWD013302984
[FUWD] metagenome; unknown
657
730
+
Arg
CCT
[ENA]
¢þ
>WENV170633683
FUWD013400193
[FUWD] metagenome; unknown
1646
1721
+
Arg
CCT
[ENA]
¢þ
>WENV170633987
FUWD013407277
[FUWD] metagenome; unknown
358
431
+
Arg
CCT
[ENA]
¢þ
>WENV170645484
JNSK01000005
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
42139
42214
+
Arg
CCT
[ENA]
¢þ
>WENV170645497
JNSK01000016
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6901
6828
-
Arg
CCT
[ENA]
¢þ
>WENV170645521
JNSK01000044
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16626
16701
+
Arg
CCT
[ENA]
¢þ
>WENV170645641
JNSL01000128
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1681
1606
-
Arg
CCT
[ENA]
¢þ
>WENV170955327
MJUJ01038641
[MJUJ] soil metagenome; viral particles from soil sample CN
84
159
+
Arg
CCT
[ENA]
¢þ
>C181018679
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
100400
100327
-
Arg
CCT
-
¡û
>C181018715
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
121187
121114
-
Arg
CCT
-
¡û
>C181018725
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
532664
532737
+
Arg
CCT
-
¡û
>C181020834
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
144903
144978
+
Arg
CCT
-
¡û
>C181020870
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
110994
111067
+
Arg
CCT
-
¡û
>C181020944
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
107266
107339
+
Arg
CCT
-
¡û
>C181020982
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
113424
113497
+
Arg
CCT
-
¡û
>C181021018
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
96569
96642
+
Arg
CCT
-
¡û
>C181021054
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
105768
105841
+
Arg
CCT
-
¡û
>C181021111
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1198205
1198132
-
Arg
CCT
-
¡û
>C181021127
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
114048
114121
+
Arg
CCT
-
¡û
>C181021166
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
106863
106936
+
Arg
CCT
-
¡û
>C181021242
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
125090
125165
+
Arg
CCT
-
¡û
>C181021278
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
101919
101992
+
Arg
CCT
-
¡û
>C181021355
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
122802
122877
+
Arg
CCT
-
¡û
>WENV022775
AACY020674177
Marine microbial communities from Global Ocean Sampling (GOS)
635
710
+
Arg
CCT
[ENA]
>WENV026082
AACY020938523
Marine microbial communities from Global Ocean Sampling (GOS)
143
218
+
Arg
CCT
[ENA]
>WENV033798
AACY021555945
Marine microbial communities from Global Ocean Sampling (GOS)
249
324
+
Arg
CCT
[ENA]
>WENV042988
AACY022281346
Marine microbial communities from Global Ocean Sampling (GOS)
218
143
-
Arg
CCT
[ENA]
>WENV057426
AACY023294496
Marine microbial communities from Global Ocean Sampling (GOS)
183
108
-
Arg
CCT
[ENA]
>WENV057508
AACY023297077
Marine microbial communities from Global Ocean Sampling (GOS)
932
857
-
Arg
CCT
[ENA]
>WENV057589
AACY023299529
Marine microbial communities from Global Ocean Sampling (GOS)
1185
1260
+
Arg
CCT
[ENA]
>WENV058237
AACY023322101
Marine microbial communities from Global Ocean Sampling (GOS)
1002
1077
+
Arg
CCT
[ENA]
>WENV058258
AACY023322706
Marine microbial communities from Global Ocean Sampling (GOS)
863
788
-
Arg
CCT
[ENA]
>WENV058323
AACY023324768
Marine microbial communities from Global Ocean Sampling (GOS)
889
964
+
Arg
CCT
[ENA]
>WENV058446
AACY023329567
Marine microbial communities from Global Ocean Sampling (GOS)
1288
1363
+
Arg
CCT
[ENA]
>WENV058535
AACY023332313
Marine microbial communities from Global Ocean Sampling (GOS)
220
145
-
Arg
CCT
[ENA]
>WENV058896
AACY023346065
Marine microbial communities from Global Ocean Sampling (GOS)
353
278
-
Arg
CCT
[ENA]
>WENV059024
AACY023351093
Marine microbial communities from Global Ocean Sampling (GOS)
440
365
-
Arg
CCT
[ENA]
>WENV059053
AACY023352420
Marine microbial communities from Global Ocean Sampling (GOS)
293
368
+
Arg
CCT
[ENA]
>WENV006988
AACY020182823
Marine microbial communities from Global Ocean Sampling (GOS)
468
391
-
Arg
CCT
[ENA]
>W1610625341
LIAM01000001
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
7139
7066
-
Arg
CCT
[ENA]
¡û
>W1710756468
LIAM01000001
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
7139
7066
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK