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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46755 (54 seq.)
>W1711117556
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
568350
568263
-
Ser
GCT
[ENA]
¡û
>W1711117587
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
218628
218715
+
Ser
GCT
[ENA]
¡û
>W1711117635
LUDI01000002
Bacteroidota
Riemerella anatipestifer [LUDI]
289210
289297
+
Ser
GCT
[ENA]
¡û
>W1711117661
LUDJ01000001
Bacteroidota
Riemerella anatipestifer [LUDJ]
61197
61110
-
Ser
GCT
[ENA]
¡û
>W1711117701
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
572111
572024
-
Ser
GCT
[ENA]
¡û
>W1711117731
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
49085
49172
+
Ser
GCT
[ENA]
¡û
>W1711117790
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
48963
49050
+
Ser
GCT
[ENA]
¡û
>W1711117826
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
48963
49050
+
Ser
GCT
[ENA]
¡û
>W1711117855
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
393850
393763
-
Ser
GCT
[ENA]
¡û
>W1711117886
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
49061
49148
+
Ser
GCT
[ENA]
¡û
>W1711117927
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
393851
393764
-
Ser
GCT
[ENA]
¡û
>W1711117999
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
568419
568332
-
Ser
GCT
[ENA]
¡û
>W1711118057
LUDT01000093
Bacteroidota
Riemerella anatipestifer [LUDT]
1000
913
-
Ser
GCT
[ENA]
¡û
>W1711118071
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
396813
396726
-
Ser
GCT
[ENA]
¡û
>W1711118102
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
104668
104755
+
Ser
GCT
[ENA]
¡û
>W1711385049
MEDR01000031
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
42643
42556
-
Ser
GCT
[ENA]
¡û
>W1711503245
MKTK01000034
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
73797
73710
-
Ser
GCT
[ENA]
¡û
>C171015076
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
333828
333741
-
Ser
GCT
-
¡û
>W131059194
ANGF01000002
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
13081
13168
+
Ser
GCT
[ENA]
¡û
>W131170817
ARFT01000012
Bacteroidota
Riemerella columbina DSM 16469 [ARFT]
54680
54767
+
Ser
GCT
[ENA]
¡û
>WENV181200460
OERK01009807
[OERK] metagenome; water of meat washing
315
400
+
Ser
GCT
[ENA]
¢þ
>WENV170009504
APMI01000464
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
17579
17492
-
Ser
GCT
[ENA]
¢þ
>C181226373
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
604209
604124
-
Ser
GCT
-
¡û
>C191025432
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
781883
781798
-
Ser
GCT
-
¡û
>C191065579
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
811634
811719
+
Ser
GCT
-
¡û
>C191185737
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
675721
675636
-
Ser
GCT
-
¡û
>W1911615620
PPEC01000001
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
285064
285149
+
Ser
GCT
[ENA]
¡û
>W1810583123
QEWX01000043
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
693
608
-
Ser
GCT
[ENA]
¡û
>W1810758164
QPIE01000006
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
89880
89965
+
Ser
GCT
[ENA]
¡û
>C151010276
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
1892322
1892409
+
Ser
GCT
[Ensembl]
¡û
>C151018477
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
589695
589608
-
Ser
GCT
-
¡û
>C151025752
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
591108
591021
-
Ser
GCT
[Ensembl]
¡û
>C151025792
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
604171
604084
-
Ser
GCT
[Ensembl]
¡û
>C11118488
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1705488
1705575
+
Ser
GCT
[Ensembl]
¡û
>W1511584104
LAVB01000001
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
125766
125853
+
Ser
GCT
[ENA]
¡û
>W1511685313
LFNG01000015
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
591
504
-
Ser
GCT
[ENA]
¡û
>C121012043
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
764189
764102
-
Ser
GCT
-
¡û
>C131006673
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
1494804
1494891
+
Ser
GCT
[Ensembl]
¡û
>C131011614
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
1126924
1127011
+
Ser
GCT
[Ensembl]
¡û
>W1610928915
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
568350
568263
-
Ser
GCT
[ENA]
¡û
>W1610928946
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
218628
218715
+
Ser
GCT
[ENA]
¡û
>W1610928994
LUDI01000002
Bacteroidota
Riemerella anatipestifer [LUDI]
289210
289297
+
Ser
GCT
[ENA]
¡û
>W1610929020
LUDJ01000001
Bacteroidota
Riemerella anatipestifer [LUDJ]
61197
61110
-
Ser
GCT
[ENA]
¡û
>W1610929060
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
572111
572024
-
Ser
GCT
[ENA]
¡û
>W1610929090
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
49085
49172
+
Ser
GCT
[ENA]
¡û
>W1610929149
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
48963
49050
+
Ser
GCT
[ENA]
¡û
>W1610929185
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
48963
49050
+
Ser
GCT
[ENA]
¡û
>W1610929214
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
393850
393763
-
Ser
GCT
[ENA]
¡û
>W1610929245
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
49061
49148
+
Ser
GCT
[ENA]
¡û
>W1610929286
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
393851
393764
-
Ser
GCT
[ENA]
¡û
>W1610929358
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
568419
568332
-
Ser
GCT
[ENA]
¡û
>W1610929416
LUDT01000093
Bacteroidota
Riemerella anatipestifer [LUDT]
1000
913
-
Ser
GCT
[ENA]
¡û
>W1610929430
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
396813
396726
-
Ser
GCT
[ENA]
¡û
>W1610929461
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
104668
104755
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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