This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468148 (22 seq.)
>W1711272847
LZFQ01000019
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
3577
3502
-
Ala
TGC
[ENA]
¡û
>C171081196
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
1151112
1151187
+
Ala
TGC
-
¡û
>C171081213
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
2520545
2520470
-
Ala
TGC
-
¡û
>C171081217
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
2205668
2205593
-
Ala
TGC
-
¡û
>WENV180357727
OBNN01079198
[OBNN] marine metagenome; Coastal water
76
151
+
Ala
TGC
[ENA]
¢þ
>WENV180379960
OBOP01232649
[OBOP] marine metagenome; water
350
275
-
Ala
TGC
[ENA]
¢þ
>WENV180391360
OBPM01106123
[OBPM] marine metagenome; ENVO:00002010
202
277
+
Ala
TGC
[ENA]
¢þ
>WENV180593855
OCOY01000705
[OCOY] marine metagenome; ENVO:00002010
2917
2992
+
Ala
TGC
[ENA]
¢þ
>WENV180594072
OCOY01026900
[OCOY] marine metagenome; ENVO:00002010
568
493
-
Ala
TGC
[ENA]
¢þ
>WENV180594076
OCOY01027532
[OCOY] marine metagenome; ENVO:00002010
2
77
+
Ala
TGC
[ENA]
¢þ
>WENV170011949
APMI01105951
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
888
813
-
Ala
TGC
[ENA]
¢þ
>C181049342
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
533599
533674
+
Ala
TGC
-
¡û
>C181049365
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
2470280
2470205
-
Ala
TGC
-
¡û
>C181049378
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
1553999
1553924
-
Ala
TGC
-
¡û
>W1911581879
PGOI01000017
Alphaproteobacteria
Pseudorhodobacter sp. MZDSW-24AT [PGOI]
3710
3635
-
Ala
TGC
[ENA]
¡û
>W1810173996
PJOM01000011
Alphaproteobacteria
Pseudotabrizicola formosa XJSP [PJOM]
1999
2074
+
Ala
TGC
[ENA]
¡û
>W1810917938
QWEY01000026
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
1885
1960
+
Ala
TGC
[ENA]
¡û
>W1610614650
LGIC01000003
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
75878
75953
+
Ala
TGC
[ENA]
¡û
>W1610614694
LGIC01000093
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
4040
4115
+
Ala
TGC
[ENA]
¡û
>W1611032196
LZFQ01000019
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
3577
3502
-
Ala
TGC
[ENA]
¡û
>W1710735784
LGIC01000003
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
75878
75953
+
Ala
TGC
[ENA]
¡û
>W1710735828
LGIC01000093
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
4040
4115
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK