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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46830 (40 seq.)
>W1711612537
MOWR01000004
Bacillota
Streptococcus sp. 'caviae' [MOWR]
216
301
+
Leu
TAA
[ENA]
¡û
>W1711612551
MOWR01000014
Bacillota
Streptococcus sp. 'caviae' [MOWR]
31725
31640
-
Leu
TAA
[ENA]
¡û
>W1711944946
NBFE01000033
Bacillota
Streptococcus mutans [NBFE]
303
218
-
Leu
TAA
[ENA]
¡û
>W131231610
AUIO01000015
Bacillota
Streptococcus plurextorum DSM 22810 [AUIO]
46410
46325
-
Leu
TAA
[ENA]
¡û
>W131231641
AUIP01000018
Bacillota
Streptococcus porci DSM 23759 [AUIP]
422
507
+
Leu
TAA
[ENA]
¡û
>W141008861
AHAA01000006
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
200
285
+
Leu
TAA
[ENA]
¡û
>WENV180284832
OBID01130591
[OBID] metagenome; sludge
378
293
-
Leu
TAA
[ENA]
¢þ
>WENV180341837
OBLI01245483
[OBLI] pig gut metagenome; faeces
40
125
+
Leu
TAA
[ENA]
¢þ
>WENV180401921
OBRN01012359
[OBRN] human gut metagenome; ENVO:feces
236
151
-
Leu
TAA
[ENA]
¢þ
>WENV180403761
OBRT01012850
[OBRT] human gut metagenome; ENVO:feces
710
795
+
Leu
TAA
[ENA]
¢þ
>WENV181196812
OEQY01021557
[OEQY] metagenome; Caecal content
429
514
+
Leu
TAA
[ENA]
¢þ
>W141245673
CALL01000007
Bacillota
Lactococcus raffinolactis 4877 [CALL]
954
1039
+
Leu
TAA
[ENA]
¡û
>WENV182502827
OIUL01006787
[OIUL] human gut metagenome; human gut
72
159
+
Leu
TAA
[ENA]
¢þ
>C181069605
CP022601
Bacillota
Streptococcus pluranimalium 14A0014 [CP022601]
38589
38674
+
Leu
TAA
-
¡û
>C181069636
CP022601
Bacillota
Streptococcus pluranimalium 14A0014 [CP022601]
284385
284470
+
Leu
TAA
-
¡û
>C181080425
CP023392
Bacillota
Lactococcus raffinolactis WiKim0068 [CP023392]
1191510
1191595
+
Leu
TAA
-
¡û
>C181080439
CP023392
Bacillota
Lactococcus raffinolactis WiKim0068 [CP023392]
1722617
1722702
+
Leu
TAA
-
¡û
>C181207380
LS483343
Bacillota
Streptococcus ferus NCTC12278 [LS483343]
20862
20947
+
Leu
TAA
-
¡û
>C181207430
LS483343
Bacillota
Streptococcus ferus NCTC12278 [LS483343]
1499281
1499196
-
Leu
TAA
-
¡û
>C191206604
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
2103157
2103072
-
Leu
TAA
-
¡û
>C191206614
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
2097294
2097209
-
Leu
TAA
-
¡û
>W141712509
JMRL01000001
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
1214
1299
+
Leu
TAA
[ENA]
¡û
>W141712547
JMRL01000030
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
14118
14203
+
Leu
TAA
[ENA]
¡û
>W1910033515
BEDT01000002
Bacillota
Lactococcus reticulitermitis Rs-Y01 [BEDT]
635
720
+
Leu
TAA
[ENA]
¡û
>W1910583195
JXJT01000060
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JXJT]
576
661
+
Leu
TAA
[ENA]
¡û
>W1910583306
JXJW01000060
Bacillota
Lactococcus piscium DSM 6634 [JXJW]
358
273
-
Leu
TAA
[ENA]
¡û
>W1910583334
JXJX01000033
Bacillota
Lactococcus plantarum DSM 20686 [JXJX]
466
551
+
Leu
TAA
[ENA]
¡û
>W1910583372
JXJY01000112
Bacillota
Lactococcus raffinolactis ATCC 43920 [JXJY]
377
292
-
Leu
TAA
[ENA]
¡û
>C151104031
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
2306243
2306158
-
Leu
TAA
[Ensembl]
¡û
>C151104045
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
1702457
1702372
-
Leu
TAA
[Ensembl]
¡û
>W1510660444
CWAN01000010
Bacillota
Streptococcus equi subsp. equi EQUI0079 [CWAN]
63651
63566
-
Leu
TAA
[ENA]
¡û
>W11149793
AEUZ01000002
Bacillota
Streptococcus urinalis 2285-97 [AEUZ]
45157
45072
-
Leu
TAA
[ENA]
¡û
>W1610072968
BCVM01000039
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
368
283
-
Leu
TAA
[ENA]
¡û
>W1610072995
BCVN01000110
Bacillota
Lactococcus raffinolactis NBRC 100932 [BCVN]
179
264
+
Leu
TAA
[ENA]
¡û
>W1610514196
FLZT01000005
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
543125
543040
-
Leu
TAA
[ENA]
¡û
>W1610514209
FLZT01000005
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
6881
6796
-
Leu
TAA
[ENA]
¡û
>W1710070086
BCVM01000039
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
368
283
-
Leu
TAA
[ENA]
¡û
>W1710070113
BCVN01000110
Bacillota
Lactococcus raffinolactis NBRC 100932 [BCVN]
179
264
+
Leu
TAA
[ENA]
¡û
>W1710582062
FPKS01000003
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [FPKS]
191
276
+
Leu
TAA
[ENA]
¡û
>W1710582091
FPKS01000025
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [FPKS]
8508
8423
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK